Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06480 and AZOBR_RS06485 are separated by 6 nucleotides AZOBR_RS06485 and AZOBR_RS06490 are separated by 60 nucleotides AZOBR_RS06490 and AZOBR_RS06495 are separated by 80 nucleotides
AZOBR_RS06480: AZOBR_RS06480 - hypothetical protein, at 1,371,825 to 1,373,735
_RS06480
AZOBR_RS06485: AZOBR_RS06485 - membrane protein, at 1,373,742 to 1,374,146
_RS06485
AZOBR_RS06490: AZOBR_RS06490 - hypothetical protein, at 1,374,207 to 1,374,410
_RS06490
AZOBR_RS06495: AZOBR_RS06495 - ABC transporter substrate-binding protein, at 1,374,491 to 1,375,459
_RS06495
Position (kb) 1373
1374
1375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1372.941 kb on + strand, within AZOBR_RS06480 at 1372.942 kb on - strand, within AZOBR_RS06480 at 1372.942 kb on - strand, within AZOBR_RS06480 at 1372.974 kb on + strand, within AZOBR_RS06480 at 1372.975 kb on - strand, within AZOBR_RS06480 at 1373.055 kb on + strand, within AZOBR_RS06480 at 1373.055 kb on + strand, within AZOBR_RS06480 at 1373.056 kb on - strand, within AZOBR_RS06480 at 1373.056 kb on - strand, within AZOBR_RS06480 at 1373.056 kb on - strand, within AZOBR_RS06480 at 1373.535 kb on + strand, within AZOBR_RS06480 at 1373.536 kb on - strand, within AZOBR_RS06480 at 1373.536 kb on - strand, within AZOBR_RS06480 at 1374.019 kb on + strand, within AZOBR_RS06485 at 1374.020 kb on - strand, within AZOBR_RS06485 at 1374.152 kb on + strand at 1374.153 kb on - strand at 1374.153 kb on - strand at 1374.184 kb on + strand at 1374.185 kb on - strand at 1374.185 kb on - strand at 1374.657 kb on - strand, within AZOBR_RS06495 at 1374.983 kb on + strand, within AZOBR_RS06495 at 1374.984 kb on - strand, within AZOBR_RS06495 at 1375.136 kb on + strand, within AZOBR_RS06495
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,372,941 + AZOBR_RS06480 0.58 -0.1 1,372,942 - AZOBR_RS06480 0.58 -0.0 1,372,942 - AZOBR_RS06480 0.58 -0.5 1,372,974 + AZOBR_RS06480 0.60 +0.2 1,372,975 - AZOBR_RS06480 0.60 +0.2 1,373,055 + AZOBR_RS06480 0.64 +0.0 1,373,055 + AZOBR_RS06480 0.64 -3.9 1,373,056 - AZOBR_RS06480 0.64 -1.2 1,373,056 - AZOBR_RS06480 0.64 +0.9 1,373,056 - AZOBR_RS06480 0.64 -3.7 1,373,535 + AZOBR_RS06480 0.89 +0.3 1,373,536 - AZOBR_RS06480 0.90 +1.0 1,373,536 - AZOBR_RS06480 0.90 +0.2 1,374,019 + AZOBR_RS06485 0.68 -2.6 1,374,020 - AZOBR_RS06485 0.69 -0.2 1,374,152 + -0.6 1,374,153 - -0.4 1,374,153 - -0.0 1,374,184 + +0.1 1,374,185 - +0.7 1,374,185 - +0.7 1,374,657 - AZOBR_RS06495 0.17 -0.6 1,374,983 + AZOBR_RS06495 0.51 -0.3 1,374,984 - AZOBR_RS06495 0.51 -1.4 1,375,136 + AZOBR_RS06495 0.67 +0.3
Or see this region's nucleotide sequence