Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06235

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06230 and AZOBR_RS06235 are separated by 100 nucleotidesAZOBR_RS06235 and AZOBR_RS06240 are separated by 251 nucleotidesAZOBR_RS06240 and AZOBR_RS06245 are separated by 5 nucleotides AZOBR_RS06230: AZOBR_RS06230 - hypothetical protein, at 1,317,923 to 1,319,881 _RS06230 AZOBR_RS06235: AZOBR_RS06235 - hypothetical protein, at 1,319,982 to 1,320,269 _RS06235 AZOBR_RS06240: AZOBR_RS06240 - hypothetical protein, at 1,320,521 to 1,321,024 _RS06240 AZOBR_RS06245: AZOBR_RS06245 - pyrroline-5-carboxylate reductase, at 1,321,030 to 1,321,857 _RS06245 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -2 -1 0 1 2at 1319.709 kb on + strandat 1319.710 kb on - strandat 1319.997 kb on - strandat 1320.412 kb on + strandat 1320.412 kb on + strandat 1320.413 kb on - strandat 1320.674 kb on + strand, within AZOBR_RS06240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,319,709 + -0.3
1,319,710 - +0.3
1,319,997 - -2.1
1,320,412 + +0.8
1,320,412 + +0.5
1,320,413 - -2.3
1,320,674 + AZOBR_RS06240 0.30 +2.1

Or see this region's nucleotide sequence