Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04070

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04060 and AZOBR_RS04065 are separated by 42 nucleotidesAZOBR_RS04065 and AZOBR_RS04070 are separated by 95 nucleotidesAZOBR_RS04070 and AZOBR_RS04075 are separated by 117 nucleotides AZOBR_RS04060: AZOBR_RS04060 - 50S rRNA methyltransferase, at 855,743 to 856,201 _RS04060 AZOBR_RS04065: AZOBR_RS04065 - ribosome-associated protein IOJAP, at 856,244 to 856,585 _RS04065 AZOBR_RS04070: AZOBR_RS04070 - nicotinic acid mononucleotide adenylyltransferase, at 856,681 to 857,298 _RS04070 AZOBR_RS04075: AZOBR_RS04075 - gamma-glutamyl phosphate reductase, at 857,416 to 858,696 _RS04075 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 855.823 kb on + strand, within AZOBR_RS04060at 855.824 kb on - strand, within AZOBR_RS04060at 856.135 kb on - strand, within AZOBR_RS04060at 856.144 kb on - strand, within AZOBR_RS04060at 856.308 kb on + strand, within AZOBR_RS04065at 856.309 kb on - strand, within AZOBR_RS04065at 856.664 kb on + strandat 856.664 kb on + strandat 856.664 kb on + strandat 857.314 kb on - strandat 857.314 kb on - strandat 857.396 kb on - strandat 857.396 kb on - strandat 857.396 kb on - strandat 857.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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855,823 + AZOBR_RS04060 0.17 -1.3
855,824 - AZOBR_RS04060 0.18 -0.6
856,135 - AZOBR_RS04060 0.85 +0.0
856,144 - AZOBR_RS04060 0.87 +0.3
856,308 + AZOBR_RS04065 0.19 -3.4
856,309 - AZOBR_RS04065 0.19 -0.6
856,664 + -1.0
856,664 + -1.4
856,664 + -2.0
857,314 - +2.8
857,314 - +0.0
857,396 - -1.6
857,396 - +0.0
857,396 - +0.1
857,411 - +0.4

Or see this region's nucleotide sequence