Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03870 and AZOBR_RS03875 are separated by 3 nucleotides AZOBR_RS03875 and AZOBR_RS03880 are separated by 59 nucleotides AZOBR_RS03880 and AZOBR_RS03885 are separated by 159 nucleotides
AZOBR_RS03870: AZOBR_RS03870 - DNA polymerase III subunit gamma/tau, at 816,777 to 818,633
_RS03870
AZOBR_RS03875: AZOBR_RS03875 - hypothetical protein, at 818,637 to 818,960
_RS03875
AZOBR_RS03880: AZOBR_RS03880 - recombinase RecR, at 819,020 to 819,613
_RS03880
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
Position (kb) 818
819 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 818.573 kb on + strand at 818.573 kb on + strand at 818.601 kb on + strand at 818.601 kb on + strand at 818.602 kb on - strand at 818.959 kb on - strand at 818.959 kb on - strand at 818.980 kb on + strand at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.560 kb on + strand at 819.611 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.775 kb on - strand at 819.775 kb on - strand at 819.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 818,573 + +0.4 818,573 + +0.8 818,601 + +2.0 818,601 + -2.4 818,602 - -5.6 818,959 - -3.2 818,959 - -3.2 818,980 + -0.5 819,326 + AZOBR_RS03880 0.52 -4.4 819,326 + AZOBR_RS03880 0.52 -0.7 819,326 + AZOBR_RS03880 0.52 -5.4 819,326 + AZOBR_RS03880 0.52 -1.0 819,327 - AZOBR_RS03880 0.52 -3.2 819,327 - AZOBR_RS03880 0.52 -1.8 819,327 - AZOBR_RS03880 0.52 -2.1 819,327 - AZOBR_RS03880 0.52 +0.8 819,560 + -2.9 819,611 + -0.3 819,774 + -0.0 819,774 + -0.5 819,774 + +1.8 819,775 - +0.8 819,775 - +0.7 819,775 - -1.5
Or see this region's nucleotide sequence