Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03120

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03110 and AZOBR_RS03115 are separated by 88 nucleotidesAZOBR_RS03115 and AZOBR_RS03120 are separated by 88 nucleotidesAZOBR_RS03120 and AZOBR_RS03125 are separated by 14 nucleotides AZOBR_RS03110: AZOBR_RS03110 - integration host factor subunit beta, at 664,483 to 664,767 _RS03110 AZOBR_RS03115: AZOBR_RS03115 - hypothetical protein, at 664,856 to 665,245 _RS03115 AZOBR_RS03120: AZOBR_RS03120 - ornithine cyclodeaminase, at 665,334 to 666,290 _RS03120 AZOBR_RS03125: AZOBR_RS03125 - FAD dependent oxidoreductase, at 666,305 to 667,417 _RS03125 Position (kb) 665 666 667Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 664.391 kb on + strandat 664.391 kb on + strandat 664.534 kb on + strand, within AZOBR_RS03110at 664.534 kb on + strandat 664.535 kb on - strand, within AZOBR_RS03110at 664.840 kb on + strandat 664.841 kb on - strandat 665.097 kb on - strand, within AZOBR_RS03115at 665.097 kb on - strand, within AZOBR_RS03115at 665.587 kb on - strand, within AZOBR_RS03120at 665.688 kb on + strand, within AZOBR_RS03120at 665.689 kb on - strand, within AZOBR_RS03120at 666.148 kb on - strand, within AZOBR_RS03120at 666.186 kb on + strand, within AZOBR_RS03120at 666.464 kb on + strand, within AZOBR_RS03125at 666.465 kb on - strand, within AZOBR_RS03125at 666.974 kb on + strand, within AZOBR_RS03125at 666.975 kb on - strand, within AZOBR_RS03125at 667.055 kb on + strand, within AZOBR_RS03125at 667.238 kb on + strand, within AZOBR_RS03125at 667.238 kb on + strand, within AZOBR_RS03125at 667.238 kb on + strand, within AZOBR_RS03125at 667.239 kb on - strand, within AZOBR_RS03125at 667.239 kb on - strand, within AZOBR_RS03125

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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664,391 + +0.8
664,391 + +0.3
664,534 + AZOBR_RS03110 0.18 +0.4
664,534 + +0.0
664,535 - AZOBR_RS03110 0.18 +2.1
664,840 + +1.0
664,841 - -1.4
665,097 - AZOBR_RS03115 0.62 -1.4
665,097 - AZOBR_RS03115 0.62 +0.4
665,587 - AZOBR_RS03120 0.26 +1.4
665,688 + AZOBR_RS03120 0.37 -2.8
665,689 - AZOBR_RS03120 0.37 -3.3
666,148 - AZOBR_RS03120 0.85 -0.3
666,186 + AZOBR_RS03120 0.89 +0.2
666,464 + AZOBR_RS03125 0.14 +0.9
666,465 - AZOBR_RS03125 0.14 -3.0
666,974 + AZOBR_RS03125 0.60 +0.2
666,975 - AZOBR_RS03125 0.60 -1.2
667,055 + AZOBR_RS03125 0.67 +0.3
667,238 + AZOBR_RS03125 0.84 -0.7
667,238 + AZOBR_RS03125 0.84 -1.8
667,238 + AZOBR_RS03125 0.84 -0.5
667,239 - AZOBR_RS03125 0.84 -3.8
667,239 - AZOBR_RS03125 0.84 -0.4

Or see this region's nucleotide sequence