Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03005 and AZOBR_RS03010 are separated by 235 nucleotides AZOBR_RS03010 and AZOBR_RS03015 are separated by 76 nucleotides AZOBR_RS03015 and AZOBR_RS03020 are separated by 188 nucleotides AZOBR_RS03020 and AZOBR_RS03025 are separated by 216 nucleotides
AZOBR_RS03005: AZOBR_RS03005 - hypothetical protein, at 640,122 to 641,219
_RS03005
AZOBR_RS03010: AZOBR_RS03010 - hypothetical protein, at 641,455 to 641,688
_RS03010
AZOBR_RS03015: AZOBR_RS03015 - heat shock protein Hsp20, at 641,765 to 642,244
_RS03015
AZOBR_RS03020: AZOBR_RS03020 - hypothetical protein, at 642,433 to 642,813
_RS03020
AZOBR_RS03025: AZOBR_RS03025 - glycosyltransferase, at 643,030 to 643,971
_RS03025
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 640.774 kb on + strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.775 kb on - strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.870 kb on + strand, within AZOBR_RS03005 at 640.871 kb on - strand, within AZOBR_RS03005 at 640.871 kb on - strand, within AZOBR_RS03005 at 640.939 kb on + strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.940 kb on - strand, within AZOBR_RS03005 at 640.952 kb on - strand, within AZOBR_RS03005 at 640.952 kb on - strand, within AZOBR_RS03005 at 641.341 kb on - strand at 641.352 kb on + strand at 641.597 kb on + strand, within AZOBR_RS03010 at 641.597 kb on + strand, within AZOBR_RS03010 at 641.597 kb on + strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.598 kb on - strand, within AZOBR_RS03010 at 641.995 kb on - strand, within AZOBR_RS03015 at 641.995 kb on - strand, within AZOBR_RS03015 at 642.135 kb on + strand, within AZOBR_RS03015 at 642.136 kb on - strand, within AZOBR_RS03015 at 642.136 kb on - strand, within AZOBR_RS03015 at 642.144 kb on + strand, within AZOBR_RS03015 at 642.347 kb on - strand at 642.347 kb on - strand at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 642.488 kb on + strand, within AZOBR_RS03020 at 643.079 kb on + strand at 643.079 kb on + strand at 643.079 kb on + strand at 643.079 kb on + strand at 643.080 kb on - strand at 643.080 kb on - strand at 643.094 kb on + strand at 643.094 kb on + strand at 643.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 640,774 + AZOBR_RS03005 0.59 -0.7 640,775 - AZOBR_RS03005 0.59 -1.8 640,775 - AZOBR_RS03005 0.59 -1.5 640,775 - AZOBR_RS03005 0.59 +0.3 640,870 + AZOBR_RS03005 0.68 -0.3 640,870 + AZOBR_RS03005 0.68 +1.3 640,870 + AZOBR_RS03005 0.68 -0.5 640,870 + AZOBR_RS03005 0.68 +0.1 640,871 - AZOBR_RS03005 0.68 +1.4 640,871 - AZOBR_RS03005 0.68 -0.7 640,939 + AZOBR_RS03005 0.74 -1.1 640,940 - AZOBR_RS03005 0.74 -0.5 640,940 - AZOBR_RS03005 0.74 -2.3 640,940 - AZOBR_RS03005 0.74 +0.1 640,952 - AZOBR_RS03005 0.76 +1.5 640,952 - AZOBR_RS03005 0.76 -0.4 641,341 - -0.3 641,352 + +0.3 641,597 + AZOBR_RS03010 0.61 +2.1 641,597 + AZOBR_RS03010 0.61 +0.4 641,597 + AZOBR_RS03010 0.61 -0.6 641,598 - AZOBR_RS03010 0.61 -1.2 641,598 - AZOBR_RS03010 0.61 +0.2 641,598 - AZOBR_RS03010 0.61 -1.5 641,995 - AZOBR_RS03015 0.48 +3.1 641,995 - AZOBR_RS03015 0.48 +2.2 642,135 + AZOBR_RS03015 0.77 +1.0 642,136 - AZOBR_RS03015 0.77 +1.6 642,136 - AZOBR_RS03015 0.77 +2.1 642,144 + AZOBR_RS03015 0.79 +1.6 642,347 - -1.6 642,347 - -3.2 642,488 + AZOBR_RS03020 0.14 -0.0 642,488 + AZOBR_RS03020 0.14 +0.2 642,488 + AZOBR_RS03020 0.14 -1.5 642,488 + AZOBR_RS03020 0.14 +0.1 643,079 + +1.6 643,079 + -0.4 643,079 + -1.5 643,079 + -2.2 643,080 - +0.1 643,080 - +0.7 643,094 + -0.5 643,094 + -0.3 643,095 - +1.8
Or see this region's nucleotide sequence