Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02515 and AZOBR_RS02520 are separated by 109 nucleotides AZOBR_RS02520 and AZOBR_RS02525 are separated by 124 nucleotides AZOBR_RS02525 and AZOBR_RS02530 are separated by 116 nucleotides
AZOBR_RS02515: AZOBR_RS02515 - cytochrome C, at 525,264 to 526,394
_RS02515
AZOBR_RS02520: AZOBR_RS02520 - hypothetical protein, at 526,504 to 526,767
_RS02520
AZOBR_RS02525: AZOBR_RS02525 - NAD(FAD)-utilizing dehydrogenase, at 526,892 to 528,139
_RS02525
AZOBR_RS02530: AZOBR_RS02530 - carboxypeptidase, at 528,256 to 530,430
_RS02530
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 526.032 kb on + strand, within AZOBR_RS02515 at 526.033 kb on - strand, within AZOBR_RS02515 at 526.033 kb on - strand, within AZOBR_RS02515 at 526.180 kb on - strand, within AZOBR_RS02515 at 526.180 kb on - strand, within AZOBR_RS02515 at 526.209 kb on + strand, within AZOBR_RS02515 at 526.225 kb on - strand, within AZOBR_RS02515 at 526.225 kb on - strand, within AZOBR_RS02515 at 526.359 kb on + strand at 526.359 kb on + strand at 526.359 kb on + strand at 526.360 kb on - strand at 526.360 kb on - strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.651 kb on + strand, within AZOBR_RS02520 at 527.021 kb on + strand, within AZOBR_RS02525 at 527.021 kb on + strand, within AZOBR_RS02525 at 527.022 kb on - strand, within AZOBR_RS02525 at 527.660 kb on + strand, within AZOBR_RS02525 at 528.068 kb on + strand at 528.069 kb on - strand at 528.126 kb on - strand at 528.197 kb on + strand at 528.245 kb on + strand at 528.245 kb on + strand at 528.246 kb on - strand at 528.246 kb on - strand at 528.246 kb on - strand at 528.282 kb on - strand at 528.347 kb on - strand at 528.815 kb on + strand, within AZOBR_RS02530 at 528.815 kb on + strand, within AZOBR_RS02530 at 528.815 kb on + strand, within AZOBR_RS02530 at 528.816 kb on - strand, within AZOBR_RS02530 at 529.060 kb on + strand, within AZOBR_RS02530 at 529.061 kb on + strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 526,032 + AZOBR_RS02515 0.68 +0.5 526,033 - AZOBR_RS02515 0.68 +1.5 526,033 - AZOBR_RS02515 0.68 +0.5 526,180 - AZOBR_RS02515 0.81 +1.3 526,180 - AZOBR_RS02515 0.81 -1.7 526,209 + AZOBR_RS02515 0.84 +0.9 526,225 - AZOBR_RS02515 0.85 -0.1 526,225 - AZOBR_RS02515 0.85 -0.2 526,359 + +0.2 526,359 + -1.0 526,359 + -0.1 526,360 - -0.2 526,360 - -2.4 526,421 + -0.0 526,421 + -1.6 526,421 + +0.5 526,421 + -0.0 526,421 + -0.6 526,422 - -1.2 526,422 - -0.4 526,422 - -0.3 526,422 - -0.3 526,651 + AZOBR_RS02520 0.56 +0.1 527,021 + AZOBR_RS02525 0.10 -1.1 527,021 + AZOBR_RS02525 0.10 -3.1 527,022 - AZOBR_RS02525 0.10 -0.8 527,660 + AZOBR_RS02525 0.62 +0.5 528,068 + -0.6 528,069 - -0.1 528,126 - -2.5 528,197 + +0.7 528,245 + -2.9 528,245 + -3.2 528,246 - +0.8 528,246 - -0.8 528,246 - -1.4 528,282 - -0.7 528,347 - +0.2 528,815 + AZOBR_RS02530 0.26 -0.8 528,815 + AZOBR_RS02530 0.26 -1.4 528,815 + AZOBR_RS02530 0.26 -0.6 528,816 - AZOBR_RS02530 0.26 +0.2 529,060 + AZOBR_RS02530 0.37 -2.4 529,061 + AZOBR_RS02530 0.37 -1.0 529,062 - AZOBR_RS02530 0.37 -0.7 529,062 - AZOBR_RS02530 0.37 -0.3 529,062 - AZOBR_RS02530 0.37 -3.0 529,062 - AZOBR_RS02530 0.37 +0.4
Or see this region's nucleotide sequence