Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02335 and AZOBR_RS02340 are separated by 174 nucleotides AZOBR_RS02340 and AZOBR_RS02345 are separated by 170 nucleotides AZOBR_RS02345 and AZOBR_RS02350 are separated by 77 nucleotides
AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407
_RS02335
AZOBR_RS02340: AZOBR_RS02340 - xanthine phosphoribosyltransferase, at 483,582 to 484,082
_RS02340
AZOBR_RS02345: AZOBR_RS02345 - tRNA-Arg, at 484,253 to 484,329
_RS02345
AZOBR_RS02350: AZOBR_RS02350 - hypothetical protein, at 484,407 to 484,586
_RS02350
Position (kb) 484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 483.715 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 484.116 kb on - strand at 484.117 kb on + strand at 484.118 kb on - strand at 484.727 kb on + strand at 484.728 kb on - strand at 485.060 kb on - strand at 485.060 kb on - strand at 485.264 kb on + strand at 485.264 kb on + strand at 485.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 483,715 + AZOBR_RS02340 0.27 -2.1 483,877 + AZOBR_RS02340 0.59 -1.2 483,877 + AZOBR_RS02340 0.59 -2.4 484,116 - -1.0 484,117 + -0.9 484,118 - -2.2 484,727 + -0.1 484,728 - +0.8 485,060 - -3.3 485,060 - +0.7 485,264 + +0.5 485,264 + -0.5 485,264 + +0.3
Or see this region's nucleotide sequence