Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01575 and AZOBR_RS01580 are separated by 19 nucleotides AZOBR_RS01580 and AZOBR_RS01585 are separated by 71 nucleotides AZOBR_RS01585 and AZOBR_RS01590 are separated by 158 nucleotides AZOBR_RS01590 and AZOBR_RS01595 overlap by 8 nucleotides
AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169
_RS01575
AZOBR_RS01580: AZOBR_RS01580 - dihydrodipicolinate reductase, at 324,189 to 324,986
_RS01580
AZOBR_RS01585: AZOBR_RS01585 - zinc transporter, at 325,058 to 326,044
_RS01585
AZOBR_RS01590: AZOBR_RS01590 - zinc ABC transporter ATP-binding protein, at 326,203 to 326,964
_RS01590
AZOBR_RS01595: AZOBR_RS01595 - zinc transporter, at 326,957 to 327,745
_RS01595
Position (kb) 325
326
327 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 324.086 kb on + strand, within AZOBR_RS01575 at 324.086 kb on + strand, within AZOBR_RS01575 at 324.167 kb on + strand at 325.339 kb on - strand, within AZOBR_RS01585 at 325.353 kb on + strand, within AZOBR_RS01585 at 325.359 kb on + strand, within AZOBR_RS01585 at 325.360 kb on - strand, within AZOBR_RS01585 at 325.470 kb on + strand, within AZOBR_RS01585 at 325.618 kb on + strand, within AZOBR_RS01585 at 325.618 kb on + strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.846 kb on - strand, within AZOBR_RS01585 at 325.846 kb on - strand, within AZOBR_RS01585 at 326.093 kb on + strand at 326.093 kb on + strand at 326.093 kb on + strand at 326.093 kb on + strand at 326.093 kb on + strand at 326.093 kb on + strand at 326.094 kb on - strand at 326.094 kb on - strand at 326.094 kb on - strand at 326.094 kb on - strand at 326.094 kb on - strand at 326.417 kb on - strand, within AZOBR_RS01590 at 326.417 kb on - strand, within AZOBR_RS01590 at 326.884 kb on + strand, within AZOBR_RS01590 at 326.884 kb on + strand, within AZOBR_RS01590 at 326.885 kb on - strand, within AZOBR_RS01590 at 326.885 kb on - strand, within AZOBR_RS01590 at 326.885 kb on - strand, within AZOBR_RS01590 at 326.885 kb on - strand, within AZOBR_RS01590
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 324,086 + AZOBR_RS01575 0.90 +0.7 324,086 + AZOBR_RS01575 0.90 +0.9 324,167 + -0.4 325,339 - AZOBR_RS01585 0.28 -1.9 325,353 + AZOBR_RS01585 0.30 -1.2 325,359 + AZOBR_RS01585 0.30 -0.1 325,360 - AZOBR_RS01585 0.31 -1.9 325,470 + AZOBR_RS01585 0.42 -3.4 325,618 + AZOBR_RS01585 0.57 -2.1 325,618 + AZOBR_RS01585 0.57 -1.6 325,619 - AZOBR_RS01585 0.57 -1.9 325,619 - AZOBR_RS01585 0.57 -1.9 325,619 - AZOBR_RS01585 0.57 -2.3 325,845 + AZOBR_RS01585 0.80 -3.6 325,845 + AZOBR_RS01585 0.80 -5.0 325,845 + AZOBR_RS01585 0.80 -1.7 325,845 + AZOBR_RS01585 0.80 -3.1 325,845 + AZOBR_RS01585 0.80 -1.9 325,846 - AZOBR_RS01585 0.80 -3.0 325,846 - AZOBR_RS01585 0.80 -3.4 326,093 + -1.1 326,093 + -3.3 326,093 + +1.1 326,093 + +0.2 326,093 + -0.4 326,093 + -0.4 326,094 - -1.1 326,094 - -1.5 326,094 - -2.6 326,094 - -1.6 326,094 - -3.8 326,417 - AZOBR_RS01590 0.28 -2.3 326,417 - AZOBR_RS01590 0.28 -0.3 326,884 + AZOBR_RS01590 0.89 +0.1 326,884 + AZOBR_RS01590 0.89 +0.5 326,885 - AZOBR_RS01590 0.90 -1.9 326,885 - AZOBR_RS01590 0.90 -1.2 326,885 - AZOBR_RS01590 0.90 -2.6 326,885 - AZOBR_RS01590 0.90 -1.3
Or see this region's nucleotide sequence