Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01565

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01560 and AZOBR_RS01565 are separated by 98 nucleotidesAZOBR_RS01565 and AZOBR_RS01570 are separated by 82 nucleotidesAZOBR_RS01570 and AZOBR_RS01575 are separated by 164 nucleotides AZOBR_RS01560: AZOBR_RS01560 - hypothetical protein, at 321,012 to 321,833 _RS01560 AZOBR_RS01565: AZOBR_RS01565 - endonuclease III, at 321,932 to 322,579 _RS01565 AZOBR_RS01570: AZOBR_RS01570 - hypothetical protein, at 322,662 to 323,180 _RS01570 AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169 _RS01575 Position (kb) 321 322 323Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 321.283 kb on - strand, within AZOBR_RS01560at 321.738 kb on + strand, within AZOBR_RS01560at 321.738 kb on + strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.739 kb on - strand, within AZOBR_RS01560at 321.832 kb on - strandat 322.026 kb on + strand, within AZOBR_RS01565at 322.027 kb on - strand, within AZOBR_RS01565at 322.281 kb on + strand, within AZOBR_RS01565at 322.357 kb on - strand, within AZOBR_RS01565at 322.491 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.503 kb on + strand, within AZOBR_RS01565at 322.504 kb on - strand, within AZOBR_RS01565at 322.504 kb on - strand, within AZOBR_RS01565at 322.905 kb on + strand, within AZOBR_RS01570at 322.906 kb on - strand, within AZOBR_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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321,283 - AZOBR_RS01560 0.33 -1.1
321,738 + AZOBR_RS01560 0.88 +0.9
321,738 + AZOBR_RS01560 0.88 +0.6
321,739 - AZOBR_RS01560 0.88 +0.8
321,739 - AZOBR_RS01560 0.88 -2.5
321,739 - AZOBR_RS01560 0.88 +1.5
321,739 - AZOBR_RS01560 0.88 +0.4
321,739 - AZOBR_RS01560 0.88 +0.5
321,739 - AZOBR_RS01560 0.88 +1.0
321,739 - AZOBR_RS01560 0.88 -0.2
321,832 - +1.1
322,026 + AZOBR_RS01565 0.15 -2.5
322,027 - AZOBR_RS01565 0.15 -1.0
322,281 + AZOBR_RS01565 0.54 -0.6
322,357 - AZOBR_RS01565 0.66 -2.7
322,491 + AZOBR_RS01565 0.86 -5.2
322,503 + AZOBR_RS01565 0.88 -0.5
322,503 + AZOBR_RS01565 0.88 -3.8
322,503 + AZOBR_RS01565 0.88 -1.1
322,504 - AZOBR_RS01565 0.88 +0.5
322,504 - AZOBR_RS01565 0.88 -0.3
322,905 + AZOBR_RS01570 0.47 -0.2
322,906 - AZOBR_RS01570 0.47 +1.1

Or see this region's nucleotide sequence