Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01325 and AZOBR_RS01330 are separated by 230 nucleotides AZOBR_RS01330 and AZOBR_RS01335 are separated by 84 nucleotides AZOBR_RS01335 and AZOBR_RS01340 overlap by 4 nucleotides AZOBR_RS01340 and AZOBR_RS01345 are separated by 199 nucleotides
AZOBR_RS01325: AZOBR_RS01325 - 2-hydroxyacid dehydrogenase, at 276,474 to 277,463
_RS01325
AZOBR_RS01330: AZOBR_RS01330 - hypothetical protein, at 277,694 to 278,248
_RS01330
AZOBR_RS01335: AZOBR_RS01335 - hypothetical protein, at 278,333 to 278,926
_RS01335
AZOBR_RS01340: AZOBR_RS01340 - rubrerythrin, at 278,923 to 279,342
_RS01340
AZOBR_RS01345: AZOBR_RS01345 - Fur family transcriptional regulator, at 279,542 to 279,973
_RS01345
Position (kb) 278
279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 277.463 kb on + strand at 277.463 kb on + strand at 277.643 kb on + strand at 277.643 kb on + strand at 277.645 kb on + strand at 277.645 kb on + strand at 278.225 kb on + strand at 278.225 kb on + strand at 278.395 kb on - strand, within AZOBR_RS01335 at 278.688 kb on + strand, within AZOBR_RS01335 at 278.688 kb on + strand, within AZOBR_RS01335 at 278.772 kb on + strand, within AZOBR_RS01335 at 278.871 kb on + strand at 279.053 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340 at 279.260 kb on + strand, within AZOBR_RS01340 at 279.261 kb on - strand, within AZOBR_RS01340 at 279.261 kb on - strand, within AZOBR_RS01340 at 279.267 kb on - strand, within AZOBR_RS01340 at 279.267 kb on - strand, within AZOBR_RS01340 at 279.720 kb on + strand, within AZOBR_RS01345 at 279.790 kb on - strand, within AZOBR_RS01345
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 277,463 + -1.3 277,463 + +0.5 277,643 + -1.2 277,643 + +0.7 277,645 + +0.1 277,645 + +0.2 278,225 + +0.9 278,225 + +1.3 278,395 - AZOBR_RS01335 0.10 -3.8 278,688 + AZOBR_RS01335 0.60 +0.4 278,688 + AZOBR_RS01335 0.60 +1.1 278,772 + AZOBR_RS01335 0.74 -0.4 278,871 + +1.0 279,053 + AZOBR_RS01340 0.31 +0.9 279,065 + AZOBR_RS01340 0.34 -0.7 279,065 + AZOBR_RS01340 0.34 +0.6 279,065 + AZOBR_RS01340 0.34 +0.5 279,260 + AZOBR_RS01340 0.80 +0.3 279,261 - AZOBR_RS01340 0.80 -2.7 279,261 - AZOBR_RS01340 0.80 +0.8 279,267 - AZOBR_RS01340 0.82 +0.1 279,267 - AZOBR_RS01340 0.82 +1.2 279,720 + AZOBR_RS01345 0.41 +7.6 279,790 - AZOBR_RS01345 0.57 +4.5
Or see this region's nucleotide sequence