Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01305

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01300 and AZOBR_RS01305 are separated by 148 nucleotidesAZOBR_RS01305 and AZOBR_RS01310 are separated by 93 nucleotides AZOBR_RS01300: AZOBR_RS01300 - peptide ABC transporter substrate-binding protein, at 269,287 to 271,095 _RS01300 AZOBR_RS01305: AZOBR_RS01305 - inorganic pyrophosphatase, at 271,244 to 271,801 _RS01305 AZOBR_RS01310: AZOBR_RS01310 - lactate dehydrogenase, at 271,895 to 272,836 _RS01310 Position (kb) 271 272Strain fitness (log2 ratio) -1 0 1 2at 270.314 kb on + strand, within AZOBR_RS01300at 270.314 kb on + strand, within AZOBR_RS01300at 270.315 kb on - strand, within AZOBR_RS01300at 270.377 kb on + strand, within AZOBR_RS01300at 270.378 kb on - strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.626 kb on + strand, within AZOBR_RS01300at 270.795 kb on - strand, within AZOBR_RS01300at 270.983 kb on + strandat 271.142 kb on + strandat 272.184 kb on + strand, within AZOBR_RS01310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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270,314 + AZOBR_RS01300 0.57 -1.2
270,314 + AZOBR_RS01300 0.57 +0.2
270,315 - AZOBR_RS01300 0.57 -1.4
270,377 + AZOBR_RS01300 0.60 +0.8
270,378 - AZOBR_RS01300 0.60 +2.0
270,626 + AZOBR_RS01300 0.74 -0.2
270,626 + AZOBR_RS01300 0.74 -0.8
270,626 + AZOBR_RS01300 0.74 -1.0
270,795 - AZOBR_RS01300 0.83 +0.8
270,983 + +1.6
271,142 + +0.7
272,184 + AZOBR_RS01310 0.31 -0.1

Or see this region's nucleotide sequence