Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01005 and AZOBR_RS01010 are separated by 162 nucleotides AZOBR_RS01010 and AZOBR_RS01015 are separated by 78 nucleotides AZOBR_RS01015 and AZOBR_RS01020 are separated by 137 nucleotides AZOBR_RS01020 and AZOBR_RS01025 overlap by 6 nucleotides
AZOBR_RS01005: AZOBR_RS01005 - Fur family transcriptional regulator, at 204,691 to 205,125
_RS01005
AZOBR_RS01010: AZOBR_RS01010 - hypothetical protein, at 205,288 to 205,530
_RS01010
AZOBR_RS01015: AZOBR_RS01015 - haloacid dehalogenase, at 205,609 to 206,274
_RS01015
AZOBR_RS01020: AZOBR_RS01020 - hypothetical protein, at 206,412 to 206,810
_RS01020
AZOBR_RS01025: AZOBR_RS01025 - hypothetical protein, at 206,805 to 207,533
_RS01025
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.642 kb on + strand at 205.078 kb on + strand at 205.079 kb on - strand at 205.243 kb on + strand at 205.243 kb on + strand at 205.243 kb on + strand at 205.243 kb on + strand at 205.244 kb on - strand at 205.528 kb on + strand at 206.035 kb on + strand, within AZOBR_RS01015 at 206.035 kb on + strand, within AZOBR_RS01015 at 206.035 kb on + strand, within AZOBR_RS01015 at 206.035 kb on + strand, within AZOBR_RS01015 at 206.035 kb on + strand, within AZOBR_RS01015 at 206.035 kb on + strand, within AZOBR_RS01015 at 206.036 kb on - strand, within AZOBR_RS01015 at 206.036 kb on - strand, within AZOBR_RS01015 at 206.036 kb on - strand, within AZOBR_RS01015 at 206.036 kb on - strand, within AZOBR_RS01015 at 206.036 kb on - strand, within AZOBR_RS01015 at 206.369 kb on - strand at 206.806 kb on + strand at 206.809 kb on - strand at 206.809 kb on - strand at 206.809 kb on - strand at 207.043 kb on + strand, within AZOBR_RS01025 at 207.043 kb on + strand, within AZOBR_RS01025
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 204,642 + -3.6 205,078 + -0.3 205,079 - +0.7 205,243 + -0.7 205,243 + +2.7 205,243 + -0.8 205,243 + +1.8 205,244 - +0.1 205,528 + +0.2 206,035 + AZOBR_RS01015 0.64 +1.8 206,035 + AZOBR_RS01015 0.64 -0.6 206,035 + AZOBR_RS01015 0.64 +2.4 206,035 + AZOBR_RS01015 0.64 -2.2 206,035 + AZOBR_RS01015 0.64 +1.4 206,035 + AZOBR_RS01015 0.64 -1.6 206,036 - AZOBR_RS01015 0.64 +1.9 206,036 - AZOBR_RS01015 0.64 +1.5 206,036 - AZOBR_RS01015 0.64 +1.9 206,036 - AZOBR_RS01015 0.64 +1.3 206,036 - AZOBR_RS01015 0.64 +2.1 206,369 - -1.2 206,806 + +1.6 206,809 - -0.5 206,809 - +0.8 206,809 - -0.6 207,043 + AZOBR_RS01025 0.33 +1.0 207,043 + AZOBR_RS01025 0.33 +1.3
Or see this region's nucleotide sequence