Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00930 and AZOBR_RS00935 are separated by 273 nucleotides AZOBR_RS00935 and AZOBR_RS00940 are separated by 314 nucleotides
AZOBR_RS00930: AZOBR_RS00930 - RNA polymerase sigma 70, at 187,088 to 187,990
_RS00930
AZOBR_RS00935: AZOBR_RS00935 - hypothetical protein, at 188,264 to 189,079
_RS00935
AZOBR_RS00940: AZOBR_RS00940 - CarD family transcriptional regulator, at 189,394 to 189,894
_RS00940
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.689 kb on + strand, within AZOBR_RS00930 at 187.689 kb on + strand, within AZOBR_RS00930 at 187.789 kb on - strand, within AZOBR_RS00930 at 187.789 kb on - strand, within AZOBR_RS00930 at 187.983 kb on + strand at 187.984 kb on - strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.991 kb on - strand at 187.991 kb on - strand at 187.991 kb on - strand at 188.167 kb on + strand at 188.167 kb on + strand at 188.168 kb on - strand at 188.236 kb on + strand at 188.236 kb on + strand at 188.236 kb on + strand at 188.245 kb on + strand at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.937 kb on + strand, within AZOBR_RS00935 at 188.937 kb on + strand, within AZOBR_RS00935 at 189.144 kb on + strand at 189.145 kb on - strand at 189.145 kb on - strand at 189.312 kb on + strand at 189.312 kb on + strand at 189.389 kb on + strand at 189.390 kb on - strand at 189.518 kb on + strand, within AZOBR_RS00940 at 190.077 kb on - strand at 190.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 187,653 + AZOBR_RS00930 0.63 -1.0 187,653 + AZOBR_RS00930 0.63 -0.9 187,653 + AZOBR_RS00930 0.63 -0.8 187,654 - AZOBR_RS00930 0.63 -2.0 187,654 - AZOBR_RS00930 0.63 -3.7 187,654 - AZOBR_RS00930 0.63 -0.3 187,654 - AZOBR_RS00930 0.63 -1.1 187,689 + AZOBR_RS00930 0.67 +0.5 187,689 + AZOBR_RS00930 0.67 -0.8 187,789 - AZOBR_RS00930 0.78 -0.8 187,789 - AZOBR_RS00930 0.78 +0.6 187,983 + +0.4 187,984 - -0.4 187,990 + +0.3 187,990 + +2.3 187,990 + +1.3 187,990 + -0.6 187,990 + -0.3 187,990 + -1.6 187,990 + -0.4 187,991 - -1.4 187,991 - -2.9 187,991 - +0.1 188,167 + -0.0 188,167 + +0.9 188,168 - +1.2 188,236 + -1.6 188,236 + -1.1 188,236 + -0.4 188,245 + +0.1 188,823 + AZOBR_RS00935 0.69 +0.5 188,823 + AZOBR_RS00935 0.69 -1.3 188,823 + AZOBR_RS00935 0.69 -1.9 188,823 + AZOBR_RS00935 0.69 +0.1 188,937 + AZOBR_RS00935 0.82 -0.5 188,937 + AZOBR_RS00935 0.82 -0.6 189,144 + +0.3 189,145 - +0.0 189,145 - -1.4 189,312 + -1.4 189,312 + +0.4 189,389 + +0.0 189,390 - +0.4 189,518 + AZOBR_RS00940 0.25 +1.0 190,077 - +1.6 190,077 - +1.5
Or see this region's nucleotide sequence