Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00115 and AZOBR_RS00120 are separated by 41 nucleotides AZOBR_RS00120 and AZOBR_RS00125 are separated by 7 nucleotides AZOBR_RS00125 and AZOBR_RS00130 are separated by 148 nucleotides AZOBR_RS00130 and AZOBR_RS00135 overlap by 1 nucleotides
AZOBR_RS00115: AZOBR_RS00115 - HAD hydrolase, at 12,249 to 12,935
_RS00115
AZOBR_RS00120: AZOBR_RS00120 - cupin, at 12,977 to 13,321
_RS00120
AZOBR_RS00125: AZOBR_RS00125 - hypothetical protein, at 13,329 to 13,727
_RS00125
AZOBR_RS00130: AZOBR_RS00130 - hypothetical protein, at 13,876 to 14,280
_RS00130
AZOBR_RS00135: AZOBR_RS00135 - hypothetical protein, at 14,280 to 14,516
_RS00135
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.054 kb on + strand at 12.055 kb on - strand at 12.111 kb on - strand at 12.209 kb on - strand at 12.209 kb on - strand at 12.882 kb on + strand at 12.882 kb on + strand at 13.148 kb on + strand, within AZOBR_RS00120 at 13.149 kb on - strand, within AZOBR_RS00120 at 13.163 kb on + strand, within AZOBR_RS00120 at 13.164 kb on - strand, within AZOBR_RS00120 at 13.301 kb on + strand at 13.301 kb on + strand at 13.302 kb on - strand at 13.302 kb on - strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.931 kb on + strand, within AZOBR_RS00130 at 13.931 kb on + strand, within AZOBR_RS00130 at 13.932 kb on - strand, within AZOBR_RS00130 at 13.971 kb on - strand, within AZOBR_RS00130 at 13.971 kb on - strand, within AZOBR_RS00130 at 13.988 kb on + strand, within AZOBR_RS00130 at 13.988 kb on + strand, within AZOBR_RS00130 at 13.989 kb on - strand, within AZOBR_RS00130 at 13.989 kb on - strand, within AZOBR_RS00130 at 14.033 kb on + strand, within AZOBR_RS00130 at 14.159 kb on + strand, within AZOBR_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 12,054 + +1.7 12,055 - -0.7 12,111 - +0.8 12,209 - +0.1 12,209 - +2.0 12,882 + -0.2 12,882 + -0.2 13,148 + AZOBR_RS00120 0.50 +1.6 13,149 - AZOBR_RS00120 0.50 -0.6 13,163 + AZOBR_RS00120 0.54 -1.5 13,164 - AZOBR_RS00120 0.54 -0.4 13,301 + +1.5 13,301 + -0.9 13,302 - -2.1 13,302 - -0.0 13,762 + +0.1 13,762 + +0.7 13,762 + -1.1 13,763 - -1.3 13,763 - -2.1 13,763 - +2.0 13,931 + AZOBR_RS00130 0.14 +1.7 13,931 + AZOBR_RS00130 0.14 -0.4 13,932 - AZOBR_RS00130 0.14 -0.2 13,971 - AZOBR_RS00130 0.23 +0.4 13,971 - AZOBR_RS00130 0.23 -0.0 13,988 + AZOBR_RS00130 0.28 -0.7 13,988 + AZOBR_RS00130 0.28 +1.2 13,989 - AZOBR_RS00130 0.28 -2.1 13,989 - AZOBR_RS00130 0.28 +0.3 14,033 + AZOBR_RS00130 0.39 -0.2 14,159 + AZOBR_RS00130 0.70 -0.3
Or see this region's nucleotide sequence