Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00070 and AZOBR_RS00075 are separated by 139 nucleotides AZOBR_RS00075 and AZOBR_RS00080 are separated by 314 nucleotides AZOBR_RS00080 and AZOBR_RS00085 are separated by 290 nucleotides
AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685
_RS00070
AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162
_RS00075
AZOBR_RS00080: AZOBR_RS00080 - hypothetical protein, at 5,477 to 5,824
_RS00080
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.929 kb on - strand, within AZOBR_RS00070 at 3.015 kb on + strand, within AZOBR_RS00070 at 3.174 kb on + strand, within AZOBR_RS00070 at 3.174 kb on + strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.369 kb on + strand, within AZOBR_RS00070 at 3.369 kb on + strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.645 kb on + strand at 3.646 kb on - strand at 3.820 kb on + strand at 4.054 kb on + strand, within AZOBR_RS00075 at 4.054 kb on + strand, within AZOBR_RS00075 at 4.055 kb on - strand, within AZOBR_RS00075 at 4.055 kb on - strand, within AZOBR_RS00075 at 4.153 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand at 4.180 kb on + strand, within AZOBR_RS00075 at 4.181 kb on - strand, within AZOBR_RS00075 at 4.181 kb on - strand, within AZOBR_RS00075 at 4.700 kb on - strand, within AZOBR_RS00075 at 4.762 kb on + strand, within AZOBR_RS00075 at 4.763 kb on - strand, within AZOBR_RS00075 at 4.765 kb on + strand, within AZOBR_RS00075 at 4.766 kb on - strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 5.089 kb on + strand at 5.090 kb on - strand at 5.194 kb on + strand at 5.195 kb on - strand at 5.323 kb on + strand at 5.342 kb on + strand at 5.342 kb on + strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.464 kb on + strand at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.620 kb on - strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.659 kb on - strand, within AZOBR_RS00080 at 5.706 kb on + strand, within AZOBR_RS00080 at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.963 kb on - strand at 5.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,929 - AZOBR_RS00070 0.14 -0.6 3,015 + AZOBR_RS00070 0.24 +0.1 3,174 + AZOBR_RS00070 0.42 -0.6 3,174 + AZOBR_RS00070 0.42 +0.1 3,175 - AZOBR_RS00070 0.42 +0.1 3,175 - AZOBR_RS00070 0.42 +0.4 3,175 - AZOBR_RS00070 0.42 -0.1 3,369 + AZOBR_RS00070 0.64 +0.4 3,369 + AZOBR_RS00070 0.64 -0.0 3,487 - AZOBR_RS00070 0.78 -0.8 3,487 - AZOBR_RS00070 0.78 -0.5 3,487 - AZOBR_RS00070 0.78 +0.7 3,645 + +0.1 3,646 - -0.0 3,820 + +0.3 4,054 + AZOBR_RS00075 0.17 +0.8 4,054 + AZOBR_RS00075 0.17 -1.1 4,055 - AZOBR_RS00075 0.17 -3.7 4,055 - AZOBR_RS00075 0.17 -0.5 4,153 + AZOBR_RS00075 0.25 +0.7 4,180 + AZOBR_RS00075 0.27 -0.4 4,180 + AZOBR_RS00075 0.27 -3.2 4,180 + AZOBR_RS00075 0.27 -0.2 4,180 + -0.3 4,180 + AZOBR_RS00075 0.27 +1.4 4,181 - AZOBR_RS00075 0.27 +0.7 4,181 - AZOBR_RS00075 0.27 -0.2 4,700 - AZOBR_RS00075 0.65 -1.0 4,762 + AZOBR_RS00075 0.70 -0.7 4,763 - AZOBR_RS00075 0.70 -2.3 4,765 + AZOBR_RS00075 0.70 -0.5 4,766 - AZOBR_RS00075 0.70 +0.8 4,786 + AZOBR_RS00075 0.72 -3.0 4,786 + AZOBR_RS00075 0.72 +0.2 4,787 - AZOBR_RS00075 0.72 +1.2 4,787 - AZOBR_RS00075 0.72 -0.0 4,954 + AZOBR_RS00075 0.84 -0.8 4,954 + AZOBR_RS00075 0.84 -2.8 5,089 + -0.6 5,090 - -0.4 5,194 + +0.9 5,195 - +0.4 5,323 + +0.1 5,342 + +0.4 5,342 + +0.4 5,343 - +0.1 5,343 - -0.3 5,343 - +0.0 5,343 - +0.6 5,464 + +0.8 5,595 + AZOBR_RS00080 0.34 +1.9 5,595 + AZOBR_RS00080 0.34 -0.3 5,595 + AZOBR_RS00080 0.34 -0.5 5,596 - AZOBR_RS00080 0.34 -0.9 5,596 - AZOBR_RS00080 0.34 -2.7 5,596 - AZOBR_RS00080 0.34 -0.4 5,596 - AZOBR_RS00080 0.34 +0.1 5,620 - AZOBR_RS00080 0.41 -3.7 5,658 + AZOBR_RS00080 0.52 -1.6 5,658 + AZOBR_RS00080 0.52 +0.1 5,659 - AZOBR_RS00080 0.52 -0.6 5,706 + AZOBR_RS00080 0.66 -1.5 5,962 + +0.5 5,962 + +0.9 5,962 + -0.4 5,962 + +0.2 5,962 + +1.2 5,962 + +0.0 5,962 + -2.2 5,962 + -0.1 5,962 + +0.3 5,963 - -0.8 5,963 - -0.9
Or see this region's nucleotide sequence