Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1031

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1029 and DvMF_1030 are separated by 166 nucleotidesDvMF_1030 and DvMF_1031 are separated by 67 nucleotidesDvMF_1031 and DvMF_1032 are separated by 319 nucleotidesDvMF_1032 and DvMF_1033 overlap by 4 nucleotides DvMF_1029: DvMF_1029 - type II secretion system protein (RefSeq), at 1,249,389 to 1,250,606 _1029 DvMF_1030: DvMF_1030 - hypothetical protein (RefSeq), at 1,250,773 to 1,251,216 _1030 DvMF_1031: DvMF_1031 - twitching motility protein (RefSeq), at 1,251,284 to 1,252,585 _1031 DvMF_1032: DvMF_1032 - hypothetical protein (RefSeq), at 1,252,905 to 1,253,342 _1032 DvMF_1033: DvMF_1033 - hypothetical protein (RefSeq), at 1,253,339 to 1,253,809 _1033 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -1 0 1at 1250.414 kb on - strand, within DvMF_1029at 1250.647 kb on + strandat 1250.655 kb on - strandat 1250.742 kb on + strandat 1250.750 kb on - strandat 1250.810 kb on + strandat 1250.818 kb on - strand, within DvMF_1030at 1251.036 kb on - strand, within DvMF_1030at 1251.147 kb on + strand, within DvMF_1030at 1251.147 kb on + strand, within DvMF_1030at 1251.155 kb on - strand, within DvMF_1030at 1251.161 kb on + strand, within DvMF_1030at 1251.169 kb on - strand, within DvMF_1030at 1251.268 kb on - strandat 1251.286 kb on + strandat 1251.418 kb on - strand, within DvMF_1031at 1251.470 kb on + strand, within DvMF_1031at 1251.473 kb on - strand, within DvMF_1031at 1251.506 kb on - strand, within DvMF_1031at 1251.602 kb on - strand, within DvMF_1031at 1251.609 kb on + strand, within DvMF_1031at 1252.101 kb on + strand, within DvMF_1031at 1252.496 kb on + strandat 1252.505 kb on + strandat 1252.523 kb on + strandat 1252.531 kb on - strandat 1252.600 kb on - strandat 1252.723 kb on - strandat 1252.738 kb on + strandat 1252.775 kb on + strandat 1253.270 kb on - strand, within DvMF_1032at 1253.272 kb on + strand, within DvMF_1032at 1253.280 kb on - strand, within DvMF_1032at 1253.287 kb on + strand, within DvMF_1032at 1253.295 kb on - strand, within DvMF_1032at 1253.564 kb on - strand, within DvMF_1033

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,250,414 - DvMF_1029 0.84 -0.1
1,250,647 + -0.9
1,250,655 - -0.2
1,250,742 + -0.2
1,250,750 - -1.6
1,250,810 + -0.7
1,250,818 - DvMF_1030 0.10 -0.0
1,251,036 - DvMF_1030 0.59 -0.1
1,251,147 + DvMF_1030 0.84 +0.0
1,251,147 + DvMF_1030 0.84 -0.3
1,251,155 - DvMF_1030 0.86 -0.1
1,251,161 + DvMF_1030 0.87 +0.2
1,251,169 - DvMF_1030 0.89 +0.1
1,251,268 - -0.6
1,251,286 + -0.8
1,251,418 - DvMF_1031 0.10 -0.7
1,251,470 + DvMF_1031 0.14 -1.6
1,251,473 - DvMF_1031 0.15 -0.1
1,251,506 - DvMF_1031 0.17 -0.9
1,251,602 - DvMF_1031 0.24 -1.0
1,251,609 + DvMF_1031 0.25 -0.6
1,252,101 + DvMF_1031 0.63 -0.8
1,252,496 + -0.7
1,252,505 + -0.6
1,252,523 + -0.9
1,252,531 - -0.6
1,252,600 - +0.3
1,252,723 - -0.1
1,252,738 + -1.7
1,252,775 + +0.1
1,253,270 - DvMF_1032 0.83 -0.1
1,253,272 + DvMF_1032 0.84 -0.1
1,253,280 - DvMF_1032 0.86 -0.1
1,253,287 + DvMF_1032 0.87 -0.1
1,253,295 - DvMF_1032 0.89 -0.3
1,253,564 - DvMF_1033 0.48 +0.4

Or see this region's nucleotide sequence