Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1029 and DvMF_1030 are separated by 166 nucleotides DvMF_1030 and DvMF_1031 are separated by 67 nucleotides DvMF_1031 and DvMF_1032 are separated by 319 nucleotides DvMF_1032 and DvMF_1033 overlap by 4 nucleotides
DvMF_1029: DvMF_1029 - type II secretion system protein (RefSeq), at 1,249,389 to 1,250,606
_1029
DvMF_1030: DvMF_1030 - hypothetical protein (RefSeq), at 1,250,773 to 1,251,216
_1030
DvMF_1031: DvMF_1031 - twitching motility protein (RefSeq), at 1,251,284 to 1,252,585
_1031
DvMF_1032: DvMF_1032 - hypothetical protein (RefSeq), at 1,252,905 to 1,253,342
_1032
DvMF_1033: DvMF_1033 - hypothetical protein (RefSeq), at 1,253,339 to 1,253,809
_1033
Position (kb)
1251
1252
1253 Strain fitness (log2 ratio)
-1
0
1 at 1250.414 kb on - strand, within DvMF_1029 at 1250.647 kb on + strand at 1250.655 kb on - strand at 1250.742 kb on + strand at 1250.750 kb on - strand at 1250.810 kb on + strand at 1250.818 kb on - strand, within DvMF_1030 at 1251.036 kb on - strand, within DvMF_1030 at 1251.147 kb on + strand, within DvMF_1030 at 1251.147 kb on + strand, within DvMF_1030 at 1251.155 kb on - strand, within DvMF_1030 at 1251.161 kb on + strand, within DvMF_1030 at 1251.169 kb on - strand, within DvMF_1030 at 1251.268 kb on - strand at 1251.286 kb on + strand at 1251.418 kb on - strand, within DvMF_1031 at 1251.470 kb on + strand, within DvMF_1031 at 1251.473 kb on - strand, within DvMF_1031 at 1251.506 kb on - strand, within DvMF_1031 at 1251.602 kb on - strand, within DvMF_1031 at 1251.609 kb on + strand, within DvMF_1031 at 1252.101 kb on + strand, within DvMF_1031 at 1252.496 kb on + strand at 1252.505 kb on + strand at 1252.523 kb on + strand at 1252.531 kb on - strand at 1252.600 kb on - strand at 1252.723 kb on - strand at 1252.738 kb on + strand at 1252.775 kb on + strand at 1253.270 kb on - strand, within DvMF_1032 at 1253.272 kb on + strand, within DvMF_1032 at 1253.280 kb on - strand, within DvMF_1032 at 1253.287 kb on + strand, within DvMF_1032 at 1253.295 kb on - strand, within DvMF_1032 at 1253.564 kb on - strand, within DvMF_1033
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,250,414 - DvMF_1029 0.84 -0.1 1,250,647 + -0.9 1,250,655 - -0.2 1,250,742 + -0.2 1,250,750 - -1.6 1,250,810 + -0.7 1,250,818 - DvMF_1030 0.10 -0.0 1,251,036 - DvMF_1030 0.59 -0.1 1,251,147 + DvMF_1030 0.84 +0.0 1,251,147 + DvMF_1030 0.84 -0.3 1,251,155 - DvMF_1030 0.86 -0.1 1,251,161 + DvMF_1030 0.87 +0.2 1,251,169 - DvMF_1030 0.89 +0.1 1,251,268 - -0.6 1,251,286 + -0.8 1,251,418 - DvMF_1031 0.10 -0.7 1,251,470 + DvMF_1031 0.14 -1.6 1,251,473 - DvMF_1031 0.15 -0.1 1,251,506 - DvMF_1031 0.17 -0.9 1,251,602 - DvMF_1031 0.24 -1.0 1,251,609 + DvMF_1031 0.25 -0.6 1,252,101 + DvMF_1031 0.63 -0.8 1,252,496 + -0.7 1,252,505 + -0.6 1,252,523 + -0.9 1,252,531 - -0.6 1,252,600 - +0.3 1,252,723 - -0.1 1,252,738 + -1.7 1,252,775 + +0.1 1,253,270 - DvMF_1032 0.83 -0.1 1,253,272 + DvMF_1032 0.84 -0.1 1,253,280 - DvMF_1032 0.86 -0.1 1,253,287 + DvMF_1032 0.87 -0.1 1,253,295 - DvMF_1032 0.89 -0.3 1,253,564 - DvMF_1033 0.48 +0.4
Or see this region's nucleotide sequence