Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3556 and Shew_3557 are separated by 3 nucleotides Shew_3557 and Shew_3558 are separated by 187 nucleotides Shew_3558 and Shew_3559 are separated by 60 nucleotides
Shew_3556: Shew_3556 - aminotransferase, class V (RefSeq), at 4,247,251 to 4,248,363
_3556
Shew_3557: Shew_3557 - hypothetical protein (RefSeq), at 4,248,367 to 4,249,539
_3557
Shew_3558: Shew_3558 - AsnC family transcriptional regulator (RefSeq), at 4,249,727 to 4,250,188
_3558
Shew_3559: Shew_3559 - hypothetical protein (RefSeq), at 4,250,249 to 4,250,797
_3559
Position (kb) 4248
4249
4250 Strain fitness (log2 ratio) -1
0
1 at 4247.867 kb on - strand, within Shew_3556 at 4248.039 kb on - strand, within Shew_3556 at 4248.093 kb on + strand, within Shew_3556 at 4248.167 kb on + strand, within Shew_3556 at 4248.765 kb on + strand, within Shew_3557 at 4249.137 kb on + strand, within Shew_3557 at 4249.229 kb on + strand, within Shew_3557 at 4249.349 kb on + strand, within Shew_3557 at 4249.357 kb on - strand, within Shew_3557 at 4249.357 kb on - strand, within Shew_3557 at 4249.434 kb on + strand at 4249.495 kb on + strand at 4249.925 kb on + strand, within Shew_3558 at 4249.965 kb on + strand, within Shew_3558 at 4250.098 kb on - strand, within Shew_3558 at 4250.132 kb on + strand, within Shew_3558 at 4250.350 kb on - strand, within Shew_3559 at 4250.378 kb on - strand, within Shew_3559
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 4,247,867 - Shew_3556 0.55 +1.5 4,248,039 - Shew_3556 0.71 +1.0 4,248,093 + Shew_3556 0.76 -0.2 4,248,167 + Shew_3556 0.82 +0.2 4,248,765 + Shew_3557 0.34 -0.1 4,249,137 + Shew_3557 0.66 -0.3 4,249,229 + Shew_3557 0.73 -0.3 4,249,349 + Shew_3557 0.84 -0.5 4,249,357 - Shew_3557 0.84 -1.0 4,249,357 - Shew_3557 0.84 +0.1 4,249,434 + -0.0 4,249,495 + -0.4 4,249,925 + Shew_3558 0.43 +0.0 4,249,965 + Shew_3558 0.52 +0.4 4,250,098 - Shew_3558 0.80 +0.6 4,250,132 + Shew_3558 0.88 -0.1 4,250,350 - Shew_3559 0.18 +0.1 4,250,378 - Shew_3559 0.23 +0.4
Or see this region's nucleotide sequence