Experiment: Cholin acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1679 and Shew_1680 are separated by 128 nucleotides Shew_1680 and Shew_1681 are separated by 218 nucleotides Shew_1681 and Shew_1682 are separated by 42 nucleotides Shew_1682 and Shew_1683 are separated by 30 nucleotides
Shew_1679: Shew_1679 - TetR family transcriptional regulator (RefSeq), at 1,930,027 to 1,930,584
_1679
Shew_1680: Shew_1680 - HPP family protein+B94 (RefSeq), at 1,930,713 to 1,931,183
_1680
Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892
_1681
Shew_1682: Shew_1682 - ribonuclease H (RefSeq), at 1,932,935 to 1,933,699
_1682
Shew_1683: Shew_1683 - hypothetical protein (RefSeq), at 1,933,730 to 1,934,305
_1683
Position (kb) 1931
1932
1933 Strain fitness (log2 ratio) -1
0
1 at 1930.689 kb on + strand at 1931.364 kb on + strand at 1931.420 kb on - strand at 1931.776 kb on + strand, within Shew_1681 at 1932.603 kb on - strand, within Shew_1681 at 1933.016 kb on + strand, within Shew_1682 at 1933.258 kb on + strand, within Shew_1682
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 20 mM remove 1,930,689 + +0.0 1,931,364 + -0.1 1,931,420 - +0.1 1,931,776 + Shew_1681 0.25 +0.1 1,932,603 - Shew_1681 0.81 -0.7 1,933,016 + Shew_1682 0.11 +0.2 1,933,258 + Shew_1682 0.42 -0.2
Or see this region's nucleotide sequence