Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1364

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1363 and Dshi_1364 are separated by 13 nucleotidesDshi_1364 and Dshi_1365 are separated by 77 nucleotidesDshi_1365 and Dshi_1366 are separated by 219 nucleotides Dshi_1363: Dshi_1363 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data), at 1,416,350 to 1,417,648 _1363 Dshi_1364: Dshi_1364 - hypothetical protein (RefSeq), at 1,417,662 to 1,418,054 _1364 Dshi_1365: Dshi_1365 - transcriptional regulator, TetR family (RefSeq), at 1,418,132 to 1,418,767 _1365 Dshi_1366: Dshi_1366 - aminotransferase class-III (RefSeq), at 1,418,987 to 1,420,312 _1366 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -1 0 1 2at 1416.681 kb on - strand, within Dshi_1363at 1416.840 kb on + strand, within Dshi_1363at 1416.986 kb on - strand, within Dshi_1363at 1417.026 kb on + strand, within Dshi_1363at 1417.195 kb on + strand, within Dshi_1363at 1417.195 kb on + strand, within Dshi_1363at 1417.203 kb on - strand, within Dshi_1363at 1417.203 kb on - strand, within Dshi_1363at 1417.205 kb on + strand, within Dshi_1363at 1417.277 kb on + strand, within Dshi_1363at 1417.407 kb on - strand, within Dshi_1363at 1417.407 kb on - strand, within Dshi_1363at 1417.517 kb on + strand, within Dshi_1363at 1417.673 kb on + strandat 1417.832 kb on - strand, within Dshi_1364at 1417.932 kb on - strand, within Dshi_1364at 1418.130 kb on + strandat 1418.130 kb on + strandat 1418.198 kb on + strand, within Dshi_1365at 1418.244 kb on + strand, within Dshi_1365at 1418.252 kb on - strand, within Dshi_1365at 1418.291 kb on + strand, within Dshi_1365at 1418.311 kb on - strand, within Dshi_1365at 1418.312 kb on - strand, within Dshi_1365at 1418.537 kb on + strand, within Dshi_1365at 1418.561 kb on - strand, within Dshi_1365at 1418.620 kb on - strand, within Dshi_1365at 1418.668 kb on + strand, within Dshi_1365at 1418.727 kb on - strandat 1418.742 kb on - strandat 1418.750 kb on + strandat 1418.770 kb on - strandat 1418.823 kb on + strandat 1418.829 kb on - strandat 1418.836 kb on + strandat 1418.858 kb on - strandat 1418.887 kb on + strandat 1418.895 kb on - strandat 1418.912 kb on - strandat 1418.919 kb on + strandat 1418.919 kb on + strandat 1418.919 kb on + strandat 1418.990 kb on + strandat 1419.007 kb on - strandat 1419.007 kb on - strandat 1419.012 kb on + strandat 1419.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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1,416,681 - Dshi_1363 0.25 +0.2
1,416,840 + Dshi_1363 0.38 +0.3
1,416,986 - Dshi_1363 0.49 -0.1
1,417,026 + Dshi_1363 0.52 -0.5
1,417,195 + Dshi_1363 0.65 +0.3
1,417,195 + Dshi_1363 0.65 -0.2
1,417,203 - Dshi_1363 0.66 -0.4
1,417,203 - Dshi_1363 0.66 +0.2
1,417,205 + Dshi_1363 0.66 +0.9
1,417,277 + Dshi_1363 0.71 -0.2
1,417,407 - Dshi_1363 0.81 -0.4
1,417,407 - Dshi_1363 0.81 +0.1
1,417,517 + Dshi_1363 0.90 -0.1
1,417,673 + -0.7
1,417,832 - Dshi_1364 0.43 -0.9
1,417,932 - Dshi_1364 0.69 -0.9
1,418,130 + +0.2
1,418,130 + +0.3
1,418,198 + Dshi_1365 0.10 +1.2
1,418,244 + Dshi_1365 0.18 +1.9
1,418,252 - Dshi_1365 0.19 +0.8
1,418,291 + Dshi_1365 0.25 -0.8
1,418,311 - Dshi_1365 0.28 +0.4
1,418,312 - Dshi_1365 0.28 +0.5
1,418,537 + Dshi_1365 0.64 +0.2
1,418,561 - Dshi_1365 0.67 +0.3
1,418,620 - Dshi_1365 0.77 -0.4
1,418,668 + Dshi_1365 0.84 -0.3
1,418,727 - +0.8
1,418,742 - -0.1
1,418,750 + -0.7
1,418,770 - -0.1
1,418,823 + +0.3
1,418,829 - +0.3
1,418,836 + +0.2
1,418,858 - +0.0
1,418,887 + +1.1
1,418,895 - -0.3
1,418,912 - -0.3
1,418,919 + +0.8
1,418,919 + +0.3
1,418,919 + +0.3
1,418,990 + -0.0
1,419,007 - -1.1
1,419,007 - +0.6
1,419,012 + -0.7
1,419,024 + +0.3

Or see this region's nucleotide sequence