Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1363 and Dshi_1364 are separated by 13 nucleotides Dshi_1364 and Dshi_1365 are separated by 77 nucleotides Dshi_1365 and Dshi_1366 are separated by 219 nucleotides
Dshi_1363: Dshi_1363 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) , at 1,416,350 to 1,417,648
_1363
Dshi_1364: Dshi_1364 - hypothetical protein (RefSeq), at 1,417,662 to 1,418,054
_1364
Dshi_1365: Dshi_1365 - transcriptional regulator, TetR family (RefSeq), at 1,418,132 to 1,418,767
_1365
Dshi_1366: Dshi_1366 - aminotransferase class-III (RefSeq), at 1,418,987 to 1,420,312
_1366
Position (kb)
1417
1418
1419 Strain fitness (log2 ratio)
-1
0
1
2 at 1416.681 kb on - strand, within Dshi_1363 at 1416.840 kb on + strand, within Dshi_1363 at 1416.986 kb on - strand, within Dshi_1363 at 1417.026 kb on + strand, within Dshi_1363 at 1417.195 kb on + strand, within Dshi_1363 at 1417.195 kb on + strand, within Dshi_1363 at 1417.203 kb on - strand, within Dshi_1363 at 1417.203 kb on - strand, within Dshi_1363 at 1417.205 kb on + strand, within Dshi_1363 at 1417.277 kb on + strand, within Dshi_1363 at 1417.407 kb on - strand, within Dshi_1363 at 1417.407 kb on - strand, within Dshi_1363 at 1417.517 kb on + strand, within Dshi_1363 at 1417.673 kb on + strand at 1417.832 kb on - strand, within Dshi_1364 at 1417.932 kb on - strand, within Dshi_1364 at 1418.130 kb on + strand at 1418.130 kb on + strand at 1418.198 kb on + strand, within Dshi_1365 at 1418.244 kb on + strand, within Dshi_1365 at 1418.252 kb on - strand, within Dshi_1365 at 1418.291 kb on + strand, within Dshi_1365 at 1418.311 kb on - strand, within Dshi_1365 at 1418.312 kb on - strand, within Dshi_1365 at 1418.537 kb on + strand, within Dshi_1365 at 1418.561 kb on - strand, within Dshi_1365 at 1418.620 kb on - strand, within Dshi_1365 at 1418.668 kb on + strand, within Dshi_1365 at 1418.727 kb on - strand at 1418.742 kb on - strand at 1418.750 kb on + strand at 1418.770 kb on - strand at 1418.823 kb on + strand at 1418.829 kb on - strand at 1418.836 kb on + strand at 1418.858 kb on - strand at 1418.887 kb on + strand at 1418.895 kb on - strand at 1418.912 kb on - strand at 1418.919 kb on + strand at 1418.919 kb on + strand at 1418.919 kb on + strand at 1418.990 kb on + strand at 1419.007 kb on - strand at 1419.007 kb on - strand at 1419.012 kb on + strand at 1419.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 1,416,681 - Dshi_1363 0.25 +0.2 1,416,840 + Dshi_1363 0.38 +0.3 1,416,986 - Dshi_1363 0.49 -0.1 1,417,026 + Dshi_1363 0.52 -0.5 1,417,195 + Dshi_1363 0.65 +0.3 1,417,195 + Dshi_1363 0.65 -0.2 1,417,203 - Dshi_1363 0.66 -0.4 1,417,203 - Dshi_1363 0.66 +0.2 1,417,205 + Dshi_1363 0.66 +0.9 1,417,277 + Dshi_1363 0.71 -0.2 1,417,407 - Dshi_1363 0.81 -0.4 1,417,407 - Dshi_1363 0.81 +0.1 1,417,517 + Dshi_1363 0.90 -0.1 1,417,673 + -0.7 1,417,832 - Dshi_1364 0.43 -0.9 1,417,932 - Dshi_1364 0.69 -0.9 1,418,130 + +0.2 1,418,130 + +0.3 1,418,198 + Dshi_1365 0.10 +1.2 1,418,244 + Dshi_1365 0.18 +1.9 1,418,252 - Dshi_1365 0.19 +0.8 1,418,291 + Dshi_1365 0.25 -0.8 1,418,311 - Dshi_1365 0.28 +0.4 1,418,312 - Dshi_1365 0.28 +0.5 1,418,537 + Dshi_1365 0.64 +0.2 1,418,561 - Dshi_1365 0.67 +0.3 1,418,620 - Dshi_1365 0.77 -0.4 1,418,668 + Dshi_1365 0.84 -0.3 1,418,727 - +0.8 1,418,742 - -0.1 1,418,750 + -0.7 1,418,770 - -0.1 1,418,823 + +0.3 1,418,829 - +0.3 1,418,836 + +0.2 1,418,858 - +0.0 1,418,887 + +1.1 1,418,895 - -0.3 1,418,912 - -0.3 1,418,919 + +0.8 1,418,919 + +0.3 1,418,919 + +0.3 1,418,990 + -0.0 1,419,007 - -1.1 1,419,007 - +0.6 1,419,012 + -0.7 1,419,024 + +0.3
Or see this region's nucleotide sequence