Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0118

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0117 and Dshi_0118 are separated by 46 nucleotidesDshi_0118 and Dshi_0119 are separated by 48 nucleotidesDshi_0119 and Dshi_0120 overlap by 4 nucleotides Dshi_0117: Dshi_0117 - methionine aminopeptidase, type I (RefSeq), at 116,582 to 117,397 _0117 Dshi_0118: Dshi_0118 - sugar fermentation stimulation protein (RefSeq), at 117,444 to 118,178 _0118 Dshi_0119: Dshi_0119 - molybdopterin binding domain (RefSeq), at 118,227 to 118,955 _0119 Dshi_0120: Dshi_0120 - GCN5-related N-acetyltransferase (RefSeq), at 118,952 to 119,677 _0120 Position (kb) 117 118 119Strain fitness (log2 ratio) -1 0 1 2at 116.491 kb on + strandat 116.545 kb on + strandat 116.553 kb on - strandat 116.562 kb on + strandat 116.570 kb on - strandat 117.368 kb on + strandat 117.508 kb on - strandat 117.609 kb on - strand, within Dshi_0118at 117.615 kb on - strand, within Dshi_0118at 117.617 kb on - strand, within Dshi_0118at 117.721 kb on - strand, within Dshi_0118at 117.736 kb on + strand, within Dshi_0118at 117.744 kb on - strand, within Dshi_0118at 117.776 kb on + strand, within Dshi_0118at 117.867 kb on - strand, within Dshi_0118at 117.952 kb on + strand, within Dshi_0118at 117.956 kb on - strand, within Dshi_0118at 118.096 kb on - strand, within Dshi_0118at 118.101 kb on + strand, within Dshi_0118at 118.109 kb on - strandat 118.109 kb on - strandat 118.180 kb on + strandat 118.185 kb on + strandat 118.187 kb on + strandat 118.193 kb on - strandat 118.195 kb on - strandat 118.216 kb on - strandat 118.216 kb on - strandat 118.216 kb on - strandat 118.217 kb on + strandat 118.225 kb on - strandat 118.289 kb on + strandat 118.378 kb on - strand, within Dshi_0119at 118.589 kb on + strand, within Dshi_0119at 118.611 kb on - strand, within Dshi_0119at 118.642 kb on + strand, within Dshi_0119at 118.753 kb on - strand, within Dshi_0119at 118.755 kb on - strand, within Dshi_0119at 119.007 kb on + strandat 119.016 kb on + strandat 119.041 kb on - strand, within Dshi_0120at 119.121 kb on - strand, within Dshi_0120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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116,491 + -1.1
116,545 + +0.6
116,553 - -0.0
116,562 + -0.3
116,570 - +0.8
117,368 + -1.3
117,508 - -0.4
117,609 - Dshi_0118 0.22 +1.7
117,615 - Dshi_0118 0.23 -0.7
117,617 - Dshi_0118 0.24 +0.8
117,721 - Dshi_0118 0.38 +0.1
117,736 + Dshi_0118 0.40 +0.1
117,744 - Dshi_0118 0.41 +0.1
117,776 + Dshi_0118 0.45 -1.4
117,867 - Dshi_0118 0.58 -0.6
117,952 + Dshi_0118 0.69 -1.1
117,956 - Dshi_0118 0.70 -0.2
118,096 - Dshi_0118 0.89 +0.2
118,101 + Dshi_0118 0.89 +1.0
118,109 - +1.3
118,109 - -0.3
118,180 + +1.4
118,185 + +2.5
118,187 + -0.7
118,193 - -1.2
118,195 - -0.0
118,216 - -0.1
118,216 - -0.9
118,216 - +0.3
118,217 + +1.1
118,225 - -0.2
118,289 + +1.1
118,378 - Dshi_0119 0.21 +0.0
118,589 + Dshi_0119 0.50 -0.1
118,611 - Dshi_0119 0.53 -0.2
118,642 + Dshi_0119 0.57 +0.2
118,753 - Dshi_0119 0.72 +0.6
118,755 - Dshi_0119 0.72 +0.3
119,007 + +1.3
119,016 + -0.2
119,041 - Dshi_0120 0.12 +2.0
119,121 - Dshi_0120 0.23 +0.1

Or see this region's nucleotide sequence