Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4189

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
5,523,266	+				+0.3
5,523,266	+				+0.8
5,523,286	+				-1.6
5,523,287	-				-1.4
5,523,295	+				-3.9
5,523,330	+				-2.5
5,524,207	+				-0.4
5,524,208	-				-0.6
5,524,252	+				-1.4
5,524,252	+				-2.2
5,524,252	+				-2.7
5,524,258	-				-0.2
5,524,260	+				-1.8
5,524,261	-				-2.3
5,524,263	+				-1.6
5,524,263	+				-0.6
5,524,267	+				-0.7
5,524,268	-				-2.3
5,524,344	-		BT4189	0.11	-2.3
5,524,344	-		BT4189	0.11	-1.9
5,524,365	-		BT4189	0.13	-3.0
5,524,365	-		BT4189	0.13	-2.6
5,524,365	-		BT4189	0.13	-2.3
5,524,446	+		BT4189	0.22	-1.7
5,524,454	-		BT4189	0.22	+0.8
5,524,540	-				+1.4
5,524,540	-		BT4189	0.31	+0.0
5,524,540	-		BT4189	0.31	-2.2
5,524,630	-		BT4189	0.40	-1.2
5,524,684	+		BT4189	0.45	-1.1
5,524,684	+		BT4189	0.45	-1.4
5,524,685	-		BT4189	0.45	-2.2
5,524,712	+		BT4189	0.48	-1.0
5,524,712	+		BT4189	0.48	+0.8
5,524,714	+		BT4189	0.48	-3.1
5,524,715	-		BT4189	0.48	-3.0
5,524,751	+		BT4189	0.52	-2.5
5,524,751	+		BT4189	0.52	+0.0
5,524,850	-		BT4189	0.62	+1.4
5,524,850	-		BT4189	0.62	+1.4
5,524,997	+		BT4189	0.76	-1.2
5,524,998	-		BT4189	0.76	-0.8
5,524,999	+		BT4189	0.76	-1.7
5,524,999	+		BT4189	0.76	-0.7
5,524,999	+		BT4189	0.76	-4.8
5,525,000	-		BT4189	0.76	-3.3
5,525,134	-		BT4189	0.90	-1.6
5,525,141	+				-2.3
5,525,155	+				-2.5
5,525,188	+				-1.6
5,525,188	+				-2.8
5,525,203	+				-2.1
5,525,204	-				-0.2
5,525,246	-				-1.4
5,525,248	+				+2.4
5,525,248	+				+0.1
5,525,255	+				-1.6
5,525,259	+				+1.8
5,525,266	+				-0.3
5,525,293	-				-0.9
5,525,338	+				+0.9
5,525,338	+				+1.2
5,525,338	+				+0.7
5,525,346	+				+2.2
5,525,346	+				+0.3
5,525,348	+		BT4190	0.10	-0.2
5,525,361	-		BT4190	0.12	-1.6
5,525,478	-		BT4190	0.29	-0.6
5,525,478	-		BT4190	0.29	-1.7
5,525,493	-		BT4190	0.31	+0.8
5,525,493	-		BT4190	0.31	-2.4
5,525,502	+				+0.4
5,525,714	-		BT4190	0.62	-3.2
5,525,732	+		BT4190	0.65	+1.1
5,525,785	+		BT4190	0.72	+0.2
5,525,785	+				+0.7
5,525,813	+		BT4190	0.76	-0.1
5,525,822	-		BT4190	0.77	-0.8
5,525,822	-		BT4190	0.77	-0.6
5,525,828	+		BT4190	0.78	+0.1
5,525,861	-		BT4190	0.83	-1.3
5,525,864	+		BT4190	0.83	-0.1
5,525,864	+		BT4190	0.83	-0.0
5,525,865	-		BT4190	0.83	+3.4
5,525,865	-		BT4190	0.83	-0.8
5,525,876	+		BT4190	0.85	-0.1
5,525,900	-		BT4190	0.88	-0.2
5,525,934	-				-0.3
5,525,972	-				-0.7
5,525,974	-				-0.9
5,525,980	-				+0.4
5,525,999	+				-0.4
5,526,073	-		BT4191	0.11	+0.4
5,526,073	-		BT4191	0.11	-1.3
5,526,102	+		BT4191	0.14	-1.5