Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2787

Experiment: BHIS with Fusidic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.004 mg/ml
3,455,796	+		BT2785	0.88	-0.7
3,455,796	+		BT2785	0.88	-0.9
3,455,803	-		BT2785	0.89	+1.5
3,455,834	-		BT2785	0.90	+0.6
3,455,873	-				-0.6
3,455,894	-				+0.1
3,455,902	+				-1.1
3,455,902	+				-1.0
3,455,903	-				-1.2
3,455,903	-				+0.1
3,455,947	-				-0.5
3,455,953	+				-2.3
3,455,953	+				-0.4
3,455,953	+				-0.2
3,455,990	+				+0.6
3,456,040	-				+0.8
3,456,040	-				-1.0
3,456,053	+				+1.1
3,456,056	-				-2.6
3,456,056	-				-0.8
3,456,081	+				+0.1
3,456,081	+				+0.9
3,456,097	+				+0.6
3,456,097	+				-1.7
3,456,590	-				-2.7
3,456,596	+				-4.1
3,456,596	+				-2.6
3,456,597	-				-2.2
3,456,597	-				-1.7
3,456,597	-				-1.0
3,456,599	+				+0.2
3,456,601	+				-2.3
3,456,601	+				-1.0
3,456,709	+				-1.4
3,456,710	-				-2.1
3,456,757	+				-0.6
3,456,758	-				-2.0
3,456,781	-				-0.6
3,456,821	-		BT2787	0.12	+1.3
3,456,821	-		BT2787	0.12	-2.4
3,456,852	+		BT2787	0.14	+0.2
3,456,852	+		BT2787	0.14	-2.8
3,456,853	-		BT2787	0.14	-1.8
3,456,861	+		BT2787	0.14	-2.4
3,456,868	+		BT2787	0.15	-0.0
3,456,868	+				+1.8
3,456,979	-		BT2787	0.21	-0.2
3,456,982	+		BT2787	0.21	-2.9
3,456,983	-		BT2787	0.21	-1.4
3,456,987	+		BT2787	0.21	-3.2
3,456,988	-		BT2787	0.21	-0.6
3,456,992	-		BT2787	0.22	-2.1
3,456,992	-		BT2787	0.22	-0.8
3,456,997	+		BT2787	0.22	+0.2
3,457,105	+		BT2787	0.28	-1.8
3,457,141	+		BT2787	0.30	-4.1
3,457,142	-		BT2787	0.30	-2.9
3,457,142	-		BT2787	0.30	-1.7
3,457,165	+		BT2787	0.31	-2.0
3,457,165	+		BT2787	0.31	-1.3
3,457,165	+		BT2787	0.31	-2.6
3,457,166	-		BT2787	0.31	-2.6
3,457,166	-		BT2787	0.31	-0.1
3,457,168	+		BT2787	0.31	-0.6
3,457,204	+		BT2787	0.33	-2.5
3,457,222	+		BT2787	0.34	-1.6
3,457,223	-		BT2787	0.34	-1.8
3,457,236	-		BT2787	0.35	-2.0
3,457,244	+		BT2787	0.36	-3.2
3,457,244	+		BT2787	0.36	-2.6
3,457,255	+		BT2787	0.36	-2.3
3,457,255	+		BT2787	0.36	-1.0
3,457,255	+		BT2787	0.36	-2.0
3,457,256	-		BT2787	0.36	-2.0
3,457,264	-		BT2787	0.37	-3.8
3,457,314	+		BT2787	0.40	+0.2
3,457,330	+		BT2787	0.40	-0.9
3,457,330	+		BT2787	0.40	-2.5
3,457,330	+		BT2787	0.40	-2.6
3,457,363	-		BT2787	0.42	-1.1
3,457,363	-		BT2787	0.42	-2.5
3,457,412	-		BT2787	0.45	-0.6
3,457,412	-		BT2787	0.45	-0.7
3,457,412	-		BT2787	0.45	-0.2
3,457,426	-		BT2787	0.46	-4.7
3,457,453	+		BT2787	0.47	-2.5
3,457,454	-		BT2787	0.47	-0.6
3,457,454	-		BT2787	0.47	-3.2
3,457,525	-		BT2787	0.51	-1.4
3,457,525	-		BT2787	0.51	-2.0
3,457,525	-		BT2787	0.51	-0.6
3,457,636	-		BT2787	0.57	-3.3
3,457,684	-		BT2787	0.60	-3.4
3,457,684	-		BT2787	0.60	-2.7
3,457,698	+		BT2787	0.61	-2.4
3,457,757	-		BT2787	0.64	-3.7
3,457,826	+		BT2787	0.68	-2.9
3,457,827	-		BT2787	0.68	-1.9
3,457,840	+		BT2787	0.69	-1.0
3,457,841	-		BT2787	0.69	+0.8
3,457,900	+		BT2787	0.72	+0.2
3,457,901	-		BT2787	0.72	-1.9
3,457,933	+		BT2787	0.74	-1.5
3,457,933	+		BT2787	0.74	-2.0
3,457,956	+		BT2787	0.75	-3.7
3,457,981	+		BT2787	0.77	-2.3
3,457,981	+		BT2787	0.77	-1.9
3,457,982	-		BT2787	0.77	-1.2
3,457,982	-		BT2787	0.77	-0.6
3,457,982	-		BT2787	0.77	-1.0
3,458,038	+		BT2787	0.80	-3.0
3,458,084	+		BT2787	0.82	-1.0
3,458,085	-		BT2787	0.82	-4.4
3,458,142	+		BT2787	0.86	-1.0
3,458,145	-		BT2787	0.86	-3.1
3,458,160	+		BT2787	0.87	-1.0
3,458,200	+		BT2787	0.89	-0.8
3,458,318	+				-2.0
3,458,318	+				-0.9
3,458,319	-				-2.2
3,458,319	-				-1.2
3,458,319	-				-0.8
3,458,319	-				-2.6
3,458,319	-				-2.9
3,458,347	+				-1.2
3,458,348	-				-2.6
3,458,400	-				-0.3
3,458,407	-				-1.0
3,458,417	-				+0.2
3,458,476	-				+1.5
3,458,476	-				-0.2
3,458,476	-				-1.3
3,458,478	+				-1.2
3,458,491	+				-0.5
3,458,532	+				+0.0
3,458,578	+				+0.8
3,458,605	+		BT2788	0.14	-0.2
3,458,631	-		BT2788	0.19	+0.2
3,458,633	-				+1.8
3,458,639	-		BT2788	0.21	-2.2
3,458,640	+		BT2788	0.21	+1.7
3,458,641	-		BT2788	0.21	-0.9
3,458,733	-				+1.8
3,458,733	-		BT2788	0.38	-1.2
3,458,736	+		BT2788	0.39	-0.5
3,458,736	+		BT2788	0.39	-0.6
3,458,822	+		BT2788	0.55	+0.8
3,458,822	+		BT2788	0.55	-0.3
3,458,822	+		BT2788	0.55	-0.6
3,458,854	-		BT2788	0.62	-0.1
3,458,862	+		BT2788	0.63	+1.0
3,458,863	-		BT2788	0.63	-2.8
3,458,863	-		BT2788	0.63	-1.1
3,458,866	+		BT2788	0.64	-1.5
3,458,866	+		BT2788	0.64	-0.4
3,458,872	+		BT2788	0.65	+0.3
3,458,873	-		BT2788	0.65	-0.2
3,458,876	-		BT2788	0.66	+1.2
3,458,876	-		BT2788	0.66	+1.5
3,458,991	+		BT2788	0.88	-0.6
3,459,013	+				-0.5
3,459,014	-				+0.2
3,459,014	-				+1.3
3,459,027	+				-0.2
3,459,048	+				+1.3
3,459,048	+				+0.1
3,459,049	-				-1.4
3,459,050	+				+0.5
3,459,051	-				+1.3
3,459,062	-				-0.8
3,459,070	-				-2.6
3,459,093	+				-1.1
3,459,100	+				+0.8
3,459,135	+		BT2789	0.15	+0.2
3,459,136	-		BT2789	0.15	+0.5
3,459,197	+		BT2789	0.26	+0.3
3,459,197	+		BT2789	0.26	+1.3
3,459,226	+		BT2789	0.31	-1.0
3,459,227	-		BT2789	0.31	-1.1
3,459,227	-		BT2789	0.31	+0.5
3,459,228	+		BT2789	0.32	-2.0
3,459,265	+		BT2789	0.38	-0.2
3,459,337	-		BT2789	0.51	-0.8
3,459,357	+		BT2789	0.55	-0.8
3,459,357	+		BT2789	0.55	-1.7
3,459,358	-		BT2789	0.55	-1.8
3,459,394	-		BT2789	0.61	-1.0
3,459,394	-		BT2789	0.61	-1.9
3,459,394	-		BT2789	0.61	-0.2