Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5005

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5004 and Psyr_5005 are separated by 59 nucleotidesPsyr_5005 and Psyr_5006 are separated by 191 nucleotidesPsyr_5006 and Psyr_5007 are separated by 20 nucleotides Psyr_5004: Psyr_5004 - chemotaxis sensory transducer, at 5,934,465 to 5,936,483 _5004 Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108 _5005 Psyr_5006: Psyr_5006 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,938,300 to 5,938,989 _5006 Psyr_5007: Psyr_5007 - Aldo/keto reductase, at 5,939,010 to 5,940,017 _5007 Position (kb) 5936 5937 5938 5939Strain fitness (log2 ratio) -2 -1 0 1 2at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.710 kb on + strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5935.711 kb on - strand, within Psyr_5004at 5936.481 kb on + strandat 5936.506 kb on + strandat 5936.507 kb on - strandat 5936.507 kb on - strandat 5936.545 kb on - strandat 5936.641 kb on - strandat 5936.641 kb on - strandat 5936.909 kb on - strand, within Psyr_5005at 5937.085 kb on + strand, within Psyr_5005at 5937.093 kb on + strand, within Psyr_5005at 5937.093 kb on + strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.094 kb on - strand, within Psyr_5005at 5937.103 kb on - strand, within Psyr_5005at 5937.103 kb on - strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.201 kb on + strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.202 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.337 kb on - strand, within Psyr_5005at 5937.359 kb on - strand, within Psyr_5005at 5937.580 kb on - strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.951 kb on + strand, within Psyr_5005at 5937.952 kb on - strandat 5937.952 kb on - strandat 5938.005 kb on - strandat 5938.006 kb on + strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.007 kb on - strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.018 kb on + strandat 5938.019 kb on - strandat 5938.019 kb on - strandat 5938.024 kb on + strandat 5938.103 kb on + strandat 5938.103 kb on + strandat 5938.103 kb on + strandat 5938.104 kb on - strandat 5938.167 kb on + strandat 5938.241 kb on - strandat 5938.384 kb on + strand, within Psyr_5006at 5938.384 kb on + strand, within Psyr_5006at 5938.384 kb on + strand, within Psyr_5006at 5938.385 kb on - strand, within Psyr_5006at 5938.486 kb on + strand, within Psyr_5006at 5938.487 kb on - strand, within Psyr_5006at 5938.623 kb on + strand, within Psyr_5006at 5938.626 kb on + strand, within Psyr_5006at 5938.626 kb on + strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.627 kb on - strand, within Psyr_5006at 5938.663 kb on + strand, within Psyr_5006at 5938.663 kb on + strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.664 kb on - strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.870 kb on + strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.871 kb on - strand, within Psyr_5006at 5938.912 kb on + strand, within Psyr_5006at 5938.913 kb on - strand, within Psyr_5006at 5939.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,935,710 + Psyr_5004 0.62 +0.9
5,935,710 + Psyr_5004 0.62 +1.3
5,935,710 + Psyr_5004 0.62 +0.4
5,935,710 + Psyr_5004 0.62 +1.5
5,935,710 + Psyr_5004 0.62 +0.1
5,935,711 - Psyr_5004 0.62 +1.7
5,935,711 - Psyr_5004 0.62 -1.0
5,935,711 - Psyr_5004 0.62 -0.1
5,935,711 - Psyr_5004 0.62 -0.5
5,936,481 + +0.4
5,936,506 + -0.4
5,936,507 - +1.2
5,936,507 - +0.2
5,936,545 - -0.8
5,936,641 - +0.3
5,936,641 - -1.9
5,936,909 - Psyr_5005 0.23 -0.1
5,937,085 + Psyr_5005 0.35 +1.8
5,937,093 + Psyr_5005 0.35 +0.7
5,937,093 + Psyr_5005 0.35 -0.9
5,937,094 - Psyr_5005 0.35 +0.7
5,937,094 - Psyr_5005 0.35 +0.2
5,937,094 - Psyr_5005 0.35 +1.2
5,937,103 - Psyr_5005 0.36 -0.4
5,937,103 - Psyr_5005 0.36 +0.2
5,937,201 + Psyr_5005 0.42 -1.0
5,937,201 + Psyr_5005 0.42 +0.7
5,937,201 + Psyr_5005 0.42 +2.7
5,937,201 + Psyr_5005 0.42 +0.7
5,937,201 + Psyr_5005 0.42 -0.1
5,937,202 - Psyr_5005 0.42 -0.1
5,937,202 - Psyr_5005 0.42 -0.1
5,937,202 - Psyr_5005 0.42 +0.2
5,937,202 - Psyr_5005 0.42 -0.4
5,937,337 - Psyr_5005 0.51 +1.1
5,937,337 - Psyr_5005 0.51 +0.9
5,937,337 - Psyr_5005 0.51 +0.5
5,937,359 - Psyr_5005 0.52 +0.3
5,937,580 - Psyr_5005 0.66 -0.4
5,937,951 + Psyr_5005 0.90 +1.6
5,937,951 + Psyr_5005 0.90 +0.7
5,937,951 + Psyr_5005 0.90 +1.9
5,937,952 - -0.2
5,937,952 - +2.5
5,938,005 - +1.5
5,938,006 + +0.2
5,938,007 - -1.1
5,938,007 - -1.2
5,938,007 - -0.0
5,938,007 - -0.7
5,938,007 - -0.2
5,938,007 - -0.5
5,938,007 - +1.9
5,938,007 - +0.6
5,938,007 - -0.4
5,938,018 + +0.7
5,938,018 + -0.1
5,938,018 + +1.2
5,938,018 + +1.6
5,938,018 + -0.4
5,938,018 + -0.1
5,938,018 + +0.1
5,938,018 + +2.5
5,938,019 - -1.9
5,938,019 - -1.1
5,938,024 + +0.5
5,938,103 + +0.2
5,938,103 + +0.3
5,938,103 + +0.9
5,938,104 - +0.2
5,938,167 + -0.1
5,938,241 - +0.9
5,938,384 + Psyr_5006 0.12 -0.9
5,938,384 + Psyr_5006 0.12 +0.9
5,938,384 + Psyr_5006 0.12 +0.2
5,938,385 - Psyr_5006 0.12 -0.1
5,938,486 + Psyr_5006 0.27 -0.7
5,938,487 - Psyr_5006 0.27 +1.3
5,938,623 + Psyr_5006 0.47 +0.2
5,938,626 + Psyr_5006 0.47 +0.7
5,938,626 + Psyr_5006 0.47 -0.8
5,938,627 - Psyr_5006 0.47 +0.2
5,938,627 - Psyr_5006 0.47 -0.1
5,938,627 - Psyr_5006 0.47 +0.7
5,938,663 + Psyr_5006 0.53 +0.7
5,938,663 + Psyr_5006 0.53 -0.6
5,938,664 - Psyr_5006 0.53 -1.6
5,938,664 - Psyr_5006 0.53 +1.7
5,938,664 - Psyr_5006 0.53 -0.2
5,938,870 + Psyr_5006 0.83 +0.9
5,938,870 + Psyr_5006 0.83 +1.3
5,938,870 + Psyr_5006 0.83 -1.1
5,938,870 + Psyr_5006 0.83 -0.2
5,938,870 + Psyr_5006 0.83 +0.3
5,938,870 + Psyr_5006 0.83 -0.1
5,938,871 - Psyr_5006 0.83 +0.6
5,938,871 - Psyr_5006 0.83 +0.7
5,938,871 - Psyr_5006 0.83 +2.5
5,938,912 + Psyr_5006 0.89 +0.4
5,938,913 - Psyr_5006 0.89 -0.1
5,939,017 - -0.2

Or see this region's nucleotide sequence