Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5000

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4998 and Psyr_4999 are separated by 63 nucleotidesPsyr_4999 and Psyr_5000 are separated by 376 nucleotidesPsyr_5000 and Psyr_5001 are separated by 77 nucleotides Psyr_4998: Psyr_4998 - hypothetical protein, at 5,928,168 to 5,928,878 _4998 Psyr_4999: Psyr_4999 - hypothetical protein, at 5,928,942 to 5,929,493 _4999 Psyr_5000: Psyr_5000 - conserved hypothetical protein, at 5,929,870 to 5,930,298 _5000 Psyr_5001: Psyr_5001 - conserved hypothetical protein, at 5,930,376 to 5,932,823 _5001 Position (kb) 5929 5930 5931Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5928.983 kb on + strandat 5928.983 kb on + strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.994 kb on - strandat 5929.026 kb on + strand, within Psyr_4999at 5929.063 kb on + strand, within Psyr_4999at 5929.063 kb on + strand, within Psyr_4999at 5929.064 kb on - strand, within Psyr_4999at 5929.064 kb on - strand, within Psyr_4999at 5929.104 kb on + strand, within Psyr_4999at 5929.104 kb on + strand, within Psyr_4999at 5929.105 kb on - strand, within Psyr_4999at 5929.159 kb on + strand, within Psyr_4999at 5929.305 kb on + strand, within Psyr_4999at 5929.305 kb on + strand, within Psyr_4999at 5929.305 kb on + strand, within Psyr_4999at 5929.305 kb on + strand, within Psyr_4999at 5929.305 kb on + strand, within Psyr_4999at 5929.306 kb on - strand, within Psyr_4999at 5929.391 kb on + strand, within Psyr_4999at 5929.491 kb on + strandat 5929.711 kb on - strandat 5929.712 kb on + strandat 5929.712 kb on + strandat 5929.712 kb on + strandat 5929.712 kb on + strandat 5929.712 kb on + strandat 5929.713 kb on - strandat 5929.713 kb on - strandat 5929.754 kb on + strandat 5929.754 kb on + strandat 5929.757 kb on + strandat 5929.757 kb on + strandat 5929.777 kb on + strandat 5929.777 kb on + strandat 5929.777 kb on + strandat 5929.777 kb on + strandat 5929.778 kb on - strandat 5929.778 kb on - strandat 5929.778 kb on - strandat 5929.778 kb on - strandat 5929.778 kb on - strandat 5929.778 kb on - strandat 5929.794 kb on + strandat 5929.863 kb on + strandat 5929.863 kb on + strandat 5929.863 kb on + strandat 5929.863 kb on + strandat 5929.863 kb on + strandat 5929.864 kb on - strandat 5929.864 kb on - strandat 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.948 kb on + strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5929.949 kb on - strand, within Psyr_5000at 5930.010 kb on + strand, within Psyr_5000at 5930.010 kb on + strand, within Psyr_5000at 5930.011 kb on - strand, within Psyr_5000at 5930.011 kb on - strand, within Psyr_5000at 5930.011 kb on - strand, within Psyr_5000at 5930.060 kb on - strand, within Psyr_5000at 5930.060 kb on - strand, within Psyr_5000at 5930.060 kb on - strand, within Psyr_5000at 5930.133 kb on - strand, within Psyr_5000at 5930.208 kb on + strand, within Psyr_5000at 5930.208 kb on + strand, within Psyr_5000at 5930.209 kb on - strand, within Psyr_5000at 5930.209 kb on - strand, within Psyr_5000at 5930.212 kb on + strand, within Psyr_5000at 5930.212 kb on + strand, within Psyr_5000at 5930.212 kb on + strand, within Psyr_5000at 5930.212 kb on + strand, within Psyr_5000at 5930.212 kb on + strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.213 kb on - strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.230 kb on + strand, within Psyr_5000at 5930.231 kb on - strand, within Psyr_5000at 5930.231 kb on - strand, within Psyr_5000at 5930.236 kb on + strand, within Psyr_5000at 5930.236 kb on + strand, within Psyr_5000at 5930.236 kb on + strand, within Psyr_5000at 5930.236 kb on + strand, within Psyr_5000at 5930.236 kb on + strand, within Psyr_5000at 5930.237 kb on - strand, within Psyr_5000at 5930.237 kb on - strand, within Psyr_5000at 5930.239 kb on + strand, within Psyr_5000at 5930.239 kb on + strand, within Psyr_5000at 5930.239 kb on + strand, within Psyr_5000at 5930.240 kb on - strand, within Psyr_5000at 5930.240 kb on - strand, within Psyr_5000at 5930.240 kb on - strand, within Psyr_5000at 5930.240 kb on - strand, within Psyr_5000at 5930.240 kb on - strand, within Psyr_5000at 5930.309 kb on + strandat 5930.309 kb on + strandat 5930.309 kb on + strandat 5930.377 kb on + strandat 5930.377 kb on + strandat 5930.377 kb on + strandat 5930.377 kb on + strandat 5930.378 kb on - strandat 5930.378 kb on - strandat 5930.378 kb on - strandat 5930.416 kb on + strandat 5930.416 kb on + strandat 5930.416 kb on + strandat 5930.416 kb on + strandat 5930.416 kb on + strandat 5930.416 kb on + strandat 5930.417 kb on - strandat 5930.417 kb on - strandat 5930.417 kb on - strandat 5930.417 kb on - strandat 5930.552 kb on - strandat 5930.629 kb on + strand, within Psyr_5001at 5930.629 kb on + strand, within Psyr_5001at 5930.630 kb on - strand, within Psyr_5001at 5930.630 kb on - strand, within Psyr_5001at 5930.802 kb on + strand, within Psyr_5001at 5930.802 kb on + strand, within Psyr_5001at 5930.802 kb on + strand, within Psyr_5001at 5930.803 kb on - strand, within Psyr_5001at 5930.803 kb on - strand, within Psyr_5001at 5930.803 kb on - strand, within Psyr_5001at 5930.803 kb on - strand, within Psyr_5001at 5930.812 kb on + strand, within Psyr_5001at 5930.812 kb on + strand, within Psyr_5001at 5930.812 kb on + strand, within Psyr_5001at 5930.812 kb on + strand, within Psyr_5001at 5930.812 kb on + strand, within Psyr_5001at 5930.813 kb on - strand, within Psyr_5001at 5930.813 kb on - strand, within Psyr_5001at 5930.886 kb on + strand, within Psyr_5001at 5930.887 kb on - strand, within Psyr_5001at 5930.887 kb on - strand, within Psyr_5001at 5930.972 kb on - strand, within Psyr_5001at 5930.972 kb on - strand, within Psyr_5001at 5930.972 kb on - strand, within Psyr_5001at 5931.054 kb on + strand, within Psyr_5001at 5931.054 kb on + strand, within Psyr_5001at 5931.054 kb on + strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.055 kb on - strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.058 kb on + strand, within Psyr_5001at 5931.059 kb on - strand, within Psyr_5001at 5931.059 kb on - strand, within Psyr_5001at 5931.059 kb on - strand, within Psyr_5001at 5931.237 kb on + strand, within Psyr_5001at 5931.238 kb on - strand, within Psyr_5001at 5931.238 kb on - strand, within Psyr_5001at 5931.238 kb on - strand, within Psyr_5001at 5931.271 kb on + strand, within Psyr_5001at 5931.272 kb on - strand, within Psyr_5001

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,928,983 + -1.3
5,928,983 + +0.8
5,928,984 - +1.7
5,928,984 - +1.0
5,928,984 - +0.4
5,928,984 - -1.4
5,928,994 - +0.9
5,929,026 + Psyr_4999 0.15 +0.5
5,929,063 + Psyr_4999 0.22 +1.0
5,929,063 + Psyr_4999 0.22 +0.7
5,929,064 - Psyr_4999 0.22 +1.3
5,929,064 - Psyr_4999 0.22 +0.9
5,929,104 + Psyr_4999 0.29 +1.4
5,929,104 + Psyr_4999 0.29 -1.2
5,929,105 - Psyr_4999 0.30 +0.6
5,929,159 + Psyr_4999 0.39 -0.6
5,929,305 + Psyr_4999 0.66 +1.4
5,929,305 + Psyr_4999 0.66 +1.3
5,929,305 + Psyr_4999 0.66 -0.4
5,929,305 + Psyr_4999 0.66 +1.6
5,929,305 + Psyr_4999 0.66 +1.9
5,929,306 - Psyr_4999 0.66 +1.5
5,929,391 + Psyr_4999 0.81 +0.4
5,929,491 + -0.4
5,929,711 - -0.2
5,929,712 + +0.8
5,929,712 + -2.2
5,929,712 + -0.3
5,929,712 + -0.2
5,929,712 + +0.9
5,929,713 - +0.5
5,929,713 - +0.4
5,929,754 + -0.5
5,929,754 + +3.3
5,929,757 + -0.5
5,929,757 + +0.7
5,929,777 + +0.6
5,929,777 + -0.3
5,929,777 + -0.5
5,929,777 + +0.8
5,929,778 - -0.4
5,929,778 - -0.2
5,929,778 - -0.2
5,929,778 - -0.7
5,929,778 - +0.2
5,929,778 - +0.6
5,929,794 + -0.1
5,929,863 + +0.9
5,929,863 + +0.5
5,929,863 + +0.2
5,929,863 + +0.3
5,929,863 + -0.4
5,929,864 - -0.4
5,929,864 - +0.1
5,929,948 + Psyr_5000 0.18 +1.5
5,929,948 + Psyr_5000 0.18 +0.7
5,929,948 + Psyr_5000 0.18 +2.2
5,929,948 + Psyr_5000 0.18 +1.3
5,929,948 + Psyr_5000 0.18 +0.5
5,929,948 + Psyr_5000 0.18 +1.5
5,929,948 + Psyr_5000 0.18 +1.9
5,929,948 + Psyr_5000 0.18 +0.4
5,929,948 + Psyr_5000 0.18 +0.7
5,929,948 + Psyr_5000 0.18 +1.1
5,929,948 + Psyr_5000 0.18 +0.4
5,929,949 - Psyr_5000 0.18 +0.1
5,929,949 - Psyr_5000 0.18 +0.5
5,929,949 - Psyr_5000 0.18 -0.1
5,929,949 - Psyr_5000 0.18 +1.1
5,929,949 - Psyr_5000 0.18 +0.3
5,929,949 - Psyr_5000 0.18 +0.6
5,929,949 - Psyr_5000 0.18 -0.1
5,929,949 - Psyr_5000 0.18 +0.7
5,929,949 - Psyr_5000 0.18 -1.4
5,929,949 - Psyr_5000 0.18 -0.0
5,930,010 + Psyr_5000 0.33 +0.1
5,930,010 + Psyr_5000 0.33 -0.5
5,930,011 - Psyr_5000 0.33 +0.0
5,930,011 - Psyr_5000 0.33 +1.7
5,930,011 - Psyr_5000 0.33 +0.5
5,930,060 - Psyr_5000 0.44 +0.6
5,930,060 - Psyr_5000 0.44 +0.4
5,930,060 - Psyr_5000 0.44 +0.1
5,930,133 - Psyr_5000 0.61 +1.4
5,930,208 + Psyr_5000 0.79 -1.1
5,930,208 + Psyr_5000 0.79 +0.3
5,930,209 - Psyr_5000 0.79 -0.1
5,930,209 - Psyr_5000 0.79 -0.2
5,930,212 + Psyr_5000 0.80 -0.1
5,930,212 + Psyr_5000 0.80 -0.3
5,930,212 + Psyr_5000 0.80 +1.5
5,930,212 + Psyr_5000 0.80 +1.9
5,930,212 + Psyr_5000 0.80 +0.3
5,930,213 - Psyr_5000 0.80 -0.2
5,930,213 - Psyr_5000 0.80 +0.4
5,930,213 - Psyr_5000 0.80 +1.5
5,930,213 - Psyr_5000 0.80 +0.4
5,930,213 - Psyr_5000 0.80 -0.5
5,930,213 - Psyr_5000 0.80 +1.2
5,930,230 + Psyr_5000 0.84 +0.3
5,930,230 + Psyr_5000 0.84 -1.4
5,930,230 + Psyr_5000 0.84 -0.5
5,930,230 + Psyr_5000 0.84 +0.9
5,930,230 + Psyr_5000 0.84 -0.4
5,930,230 + Psyr_5000 0.84 -1.3
5,930,230 + Psyr_5000 0.84 +0.4
5,930,230 + Psyr_5000 0.84 +1.7
5,930,231 - Psyr_5000 0.84 +0.1
5,930,231 - Psyr_5000 0.84 -0.1
5,930,236 + Psyr_5000 0.85 -0.3
5,930,236 + Psyr_5000 0.85 -0.1
5,930,236 + Psyr_5000 0.85 +0.8
5,930,236 + Psyr_5000 0.85 +0.2
5,930,236 + Psyr_5000 0.85 +0.4
5,930,237 - Psyr_5000 0.86 +0.1
5,930,237 - Psyr_5000 0.86 -0.6
5,930,239 + Psyr_5000 0.86 +0.4
5,930,239 + Psyr_5000 0.86 -0.2
5,930,239 + Psyr_5000 0.86 -1.3
5,930,240 - Psyr_5000 0.86 -0.5
5,930,240 - Psyr_5000 0.86 -1.5
5,930,240 - Psyr_5000 0.86 -0.4
5,930,240 - Psyr_5000 0.86 +0.4
5,930,240 - Psyr_5000 0.86 -1.1
5,930,309 + -0.7
5,930,309 + +0.1
5,930,309 + +0.2
5,930,377 + +1.1
5,930,377 + +0.6
5,930,377 + +0.6
5,930,377 + -0.2
5,930,378 - -0.2
5,930,378 - -0.1
5,930,378 - -0.2
5,930,416 + +0.6
5,930,416 + +0.3
5,930,416 + +0.8
5,930,416 + +0.4
5,930,416 + +0.7
5,930,416 + +0.1
5,930,417 - +1.5
5,930,417 - +1.1
5,930,417 - +0.0
5,930,417 - +3.3
5,930,552 - -0.4
5,930,629 + Psyr_5001 0.10 -0.4
5,930,629 + Psyr_5001 0.10 -0.7
5,930,630 - Psyr_5001 0.10 +0.4
5,930,630 - Psyr_5001 0.10 +0.7
5,930,802 + Psyr_5001 0.17 +1.3
5,930,802 + Psyr_5001 0.17 +0.4
5,930,802 + Psyr_5001 0.17 -0.4
5,930,803 - Psyr_5001 0.17 +1.4
5,930,803 - Psyr_5001 0.17 -0.0
5,930,803 - Psyr_5001 0.17 +0.5
5,930,803 - Psyr_5001 0.17 -0.1
5,930,812 + Psyr_5001 0.18 -0.8
5,930,812 + Psyr_5001 0.18 -2.1
5,930,812 + Psyr_5001 0.18 +0.3
5,930,812 + Psyr_5001 0.18 -0.2
5,930,812 + Psyr_5001 0.18 +0.3
5,930,813 - Psyr_5001 0.18 -1.4
5,930,813 - Psyr_5001 0.18 -1.4
5,930,886 + Psyr_5001 0.21 +0.4
5,930,887 - Psyr_5001 0.21 +0.9
5,930,887 - Psyr_5001 0.21 -0.6
5,930,972 - Psyr_5001 0.24 +1.1
5,930,972 - Psyr_5001 0.24 -1.6
5,930,972 - Psyr_5001 0.24 +0.1
5,931,054 + Psyr_5001 0.28 +0.6
5,931,054 + Psyr_5001 0.28 -0.3
5,931,054 + Psyr_5001 0.28 +0.4
5,931,055 - Psyr_5001 0.28 +0.5
5,931,055 - Psyr_5001 0.28 -0.0
5,931,055 - Psyr_5001 0.28 +0.2
5,931,055 - Psyr_5001 0.28 -0.3
5,931,055 - Psyr_5001 0.28 +0.6
5,931,055 - Psyr_5001 0.28 +0.7
5,931,055 - Psyr_5001 0.28 -0.5
5,931,058 + Psyr_5001 0.28 +0.3
5,931,058 + Psyr_5001 0.28 -2.1
5,931,058 + Psyr_5001 0.28 +0.9
5,931,058 + Psyr_5001 0.28 +0.7
5,931,058 + Psyr_5001 0.28 -0.3
5,931,058 + Psyr_5001 0.28 +2.0
5,931,059 - Psyr_5001 0.28 -1.1
5,931,059 - Psyr_5001 0.28 +0.2
5,931,059 - Psyr_5001 0.28 +0.1
5,931,237 + Psyr_5001 0.35 +0.7
5,931,238 - Psyr_5001 0.35 +0.5
5,931,238 - Psyr_5001 0.35 +0.3
5,931,238 - Psyr_5001 0.35 -1.1
5,931,271 + Psyr_5001 0.37 +0.1
5,931,272 - Psyr_5001 0.37 -0.3

Or see this region's nucleotide sequence