Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4997

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4996 and Psyr_4997 are separated by 391 nucleotidesPsyr_4997 and Psyr_4998 are separated by 156 nucleotidesPsyr_4998 and Psyr_4999 are separated by 63 nucleotides Psyr_4996: Psyr_4996 - hypothetical protein, at 5,925,335 to 5,925,952 _4996 Psyr_4997: Psyr_4997 - YD repeat protein, at 5,926,344 to 5,928,011 _4997 Psyr_4998: Psyr_4998 - hypothetical protein, at 5,928,168 to 5,928,878 _4998 Psyr_4999: Psyr_4999 - hypothetical protein, at 5,928,942 to 5,929,493 _4999 Position (kb) 5926 5927 5928 5929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5925.394 kb on - strandat 5925.482 kb on + strand, within Psyr_4996at 5925.506 kb on - strand, within Psyr_4996at 5925.535 kb on + strand, within Psyr_4996at 5925.536 kb on - strand, within Psyr_4996at 5925.536 kb on - strand, within Psyr_4996at 5925.570 kb on - strand, within Psyr_4996at 5925.570 kb on - strand, within Psyr_4996at 5925.651 kb on - strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.660 kb on + strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.661 kb on - strand, within Psyr_4996at 5925.725 kb on + strand, within Psyr_4996at 5925.728 kb on + strand, within Psyr_4996at 5925.803 kb on + strand, within Psyr_4996at 5925.810 kb on - strand, within Psyr_4996at 5926.010 kb on + strandat 5926.022 kb on - strandat 5926.028 kb on + strandat 5926.045 kb on - strandat 5926.127 kb on + strandat 5926.127 kb on + strandat 5926.128 kb on - strandat 5926.128 kb on - strandat 5926.153 kb on + strandat 5926.153 kb on + strandat 5926.153 kb on - strandat 5926.154 kb on - strandat 5926.190 kb on - strandat 5926.224 kb on - strandat 5926.275 kb on + strandat 5926.512 kb on - strand, within Psyr_4997at 5926.512 kb on - strand, within Psyr_4997at 5926.516 kb on - strand, within Psyr_4997at 5926.516 kb on - strand, within Psyr_4997at 5926.516 kb on - strand, within Psyr_4997at 5926.516 kb on - strand, within Psyr_4997at 5926.516 kb on - strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.692 kb on + strand, within Psyr_4997at 5926.885 kb on + strand, within Psyr_4997at 5927.062 kb on - strand, within Psyr_4997at 5927.067 kb on + strand, within Psyr_4997at 5927.068 kb on - strand, within Psyr_4997at 5927.068 kb on - strand, within Psyr_4997at 5927.068 kb on - strand, within Psyr_4997at 5927.095 kb on + strand, within Psyr_4997at 5927.131 kb on - strand, within Psyr_4997at 5927.131 kb on - strand, within Psyr_4997at 5927.131 kb on - strand, within Psyr_4997at 5927.131 kb on - strand, within Psyr_4997at 5927.134 kb on - strand, within Psyr_4997at 5927.134 kb on - strand, within Psyr_4997at 5927.335 kb on + strand, within Psyr_4997at 5927.336 kb on - strand, within Psyr_4997at 5927.392 kb on - strand, within Psyr_4997at 5927.392 kb on - strand, within Psyr_4997at 5927.716 kb on + strand, within Psyr_4997at 5927.716 kb on + strand, within Psyr_4997at 5927.716 kb on + strand, within Psyr_4997at 5927.716 kb on + strand, within Psyr_4997at 5927.723 kb on + strand, within Psyr_4997at 5927.755 kb on - strand, within Psyr_4997at 5927.898 kb on + strandat 5927.898 kb on + strandat 5927.939 kb on - strandat 5927.939 kb on - strandat 5927.952 kb on + strandat 5927.953 kb on - strandat 5927.955 kb on + strandat 5927.955 kb on + strandat 5927.955 kb on + strandat 5927.955 kb on + strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.956 kb on - strandat 5927.977 kb on + strandat 5927.990 kb on + strandat 5927.991 kb on - strandat 5928.062 kb on - strandat 5928.062 kb on - strandat 5928.084 kb on + strandat 5928.085 kb on - strandat 5928.091 kb on - strandat 5928.095 kb on - strandat 5928.099 kb on - strandat 5928.103 kb on + strandat 5928.161 kb on + strandat 5928.232 kb on + strandat 5928.233 kb on - strandat 5928.277 kb on + strand, within Psyr_4998at 5928.298 kb on + strand, within Psyr_4998at 5928.313 kb on + strand, within Psyr_4998at 5928.316 kb on - strand, within Psyr_4998at 5928.316 kb on - strand, within Psyr_4998at 5928.398 kb on + strand, within Psyr_4998at 5928.398 kb on + strand, within Psyr_4998at 5928.411 kb on + strand, within Psyr_4998at 5928.412 kb on - strand, within Psyr_4998at 5928.412 kb on - strand, within Psyr_4998at 5928.416 kb on + strand, within Psyr_4998at 5928.417 kb on - strand, within Psyr_4998at 5928.510 kb on + strand, within Psyr_4998at 5928.511 kb on - strand, within Psyr_4998at 5928.557 kb on + strand, within Psyr_4998at 5928.558 kb on - strand, within Psyr_4998at 5928.567 kb on + strand, within Psyr_4998at 5928.567 kb on + strand, within Psyr_4998at 5928.568 kb on - strand, within Psyr_4998at 5928.568 kb on - strand, within Psyr_4998at 5928.570 kb on - strand, within Psyr_4998at 5928.570 kb on - strand, within Psyr_4998at 5928.583 kb on - strand, within Psyr_4998at 5928.661 kb on + strand, within Psyr_4998at 5928.661 kb on + strand, within Psyr_4998at 5928.662 kb on - strand, within Psyr_4998at 5928.683 kb on + strand, within Psyr_4998at 5928.787 kb on - strand, within Psyr_4998at 5928.787 kb on - strand, within Psyr_4998at 5928.787 kb on - strand, within Psyr_4998at 5928.798 kb on + strand, within Psyr_4998at 5928.862 kb on + strandat 5928.862 kb on + strandat 5928.983 kb on + strandat 5928.983 kb on + strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.984 kb on - strandat 5928.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,925,394 - +0.9
5,925,482 + Psyr_4996 0.24 -0.0
5,925,506 - Psyr_4996 0.28 +0.4
5,925,535 + Psyr_4996 0.32 +0.3
5,925,536 - Psyr_4996 0.33 -1.9
5,925,536 - Psyr_4996 0.33 -0.2
5,925,570 - Psyr_4996 0.38 -3.2
5,925,570 - Psyr_4996 0.38 +0.2
5,925,651 - Psyr_4996 0.51 +1.1
5,925,660 + Psyr_4996 0.53 +0.3
5,925,660 + Psyr_4996 0.53 -0.1
5,925,660 + Psyr_4996 0.53 +0.9
5,925,660 + Psyr_4996 0.53 -0.1
5,925,660 + Psyr_4996 0.53 +0.7
5,925,660 + Psyr_4996 0.53 -0.6
5,925,660 + Psyr_4996 0.53 +2.5
5,925,660 + Psyr_4996 0.53 -0.7
5,925,660 + Psyr_4996 0.53 -1.4
5,925,661 - Psyr_4996 0.53 -0.5
5,925,661 - Psyr_4996 0.53 -0.8
5,925,661 - Psyr_4996 0.53 +0.9
5,925,661 - Psyr_4996 0.53 +0.9
5,925,661 - Psyr_4996 0.53 -0.1
5,925,661 - Psyr_4996 0.53 +0.1
5,925,661 - Psyr_4996 0.53 +1.3
5,925,661 - Psyr_4996 0.53 +0.5
5,925,725 + Psyr_4996 0.63 +0.8
5,925,728 + Psyr_4996 0.64 +0.2
5,925,803 + Psyr_4996 0.76 -0.2
5,925,810 - Psyr_4996 0.77 -0.2
5,926,010 + +0.2
5,926,022 - -0.1
5,926,028 + +1.2
5,926,045 - +0.5
5,926,127 + +0.4
5,926,127 + +0.1
5,926,128 - +0.1
5,926,128 - -0.6
5,926,153 + -0.1
5,926,153 + -0.7
5,926,153 - -0.4
5,926,154 - +0.9
5,926,190 - +1.0
5,926,224 - -0.6
5,926,275 + -0.9
5,926,512 - Psyr_4997 0.10 -0.2
5,926,512 - Psyr_4997 0.10 +0.6
5,926,516 - Psyr_4997 0.10 -0.0
5,926,516 - Psyr_4997 0.10 -1.3
5,926,516 - Psyr_4997 0.10 +1.9
5,926,516 - Psyr_4997 0.10 +0.6
5,926,516 - Psyr_4997 0.10 -0.3
5,926,692 + Psyr_4997 0.21 +3.3
5,926,692 + Psyr_4997 0.21 +0.3
5,926,692 + Psyr_4997 0.21 -0.3
5,926,692 + Psyr_4997 0.21 +0.1
5,926,692 + Psyr_4997 0.21 +0.3
5,926,692 + Psyr_4997 0.21 -0.1
5,926,692 + Psyr_4997 0.21 +0.2
5,926,692 + Psyr_4997 0.21 +0.1
5,926,692 + Psyr_4997 0.21 +0.2
5,926,692 + Psyr_4997 0.21 +0.3
5,926,692 + Psyr_4997 0.21 +0.3
5,926,885 + Psyr_4997 0.32 +0.5
5,927,062 - Psyr_4997 0.43 -0.6
5,927,067 + Psyr_4997 0.43 +0.8
5,927,068 - Psyr_4997 0.43 +0.3
5,927,068 - Psyr_4997 0.43 +1.5
5,927,068 - Psyr_4997 0.43 +0.4
5,927,095 + Psyr_4997 0.45 -0.3
5,927,131 - Psyr_4997 0.47 +0.3
5,927,131 - Psyr_4997 0.47 -0.7
5,927,131 - Psyr_4997 0.47 +1.1
5,927,131 - Psyr_4997 0.47 +0.3
5,927,134 - Psyr_4997 0.47 +0.5
5,927,134 - Psyr_4997 0.47 +0.0
5,927,335 + Psyr_4997 0.59 +0.3
5,927,336 - Psyr_4997 0.59 +0.7
5,927,392 - Psyr_4997 0.63 -0.8
5,927,392 - Psyr_4997 0.63 +0.3
5,927,716 + Psyr_4997 0.82 +0.7
5,927,716 + Psyr_4997 0.82 -1.5
5,927,716 + Psyr_4997 0.82 +1.6
5,927,716 + Psyr_4997 0.82 +1.8
5,927,723 + Psyr_4997 0.83 +1.3
5,927,755 - Psyr_4997 0.85 -0.3
5,927,898 + -0.4
5,927,898 + -2.2
5,927,939 - +0.9
5,927,939 - -0.2
5,927,952 + +0.9
5,927,953 - +0.2
5,927,955 + -2.1
5,927,955 + -0.6
5,927,955 + +1.0
5,927,955 + +0.2
5,927,956 - -0.4
5,927,956 - -0.7
5,927,956 - -0.0
5,927,956 - -1.2
5,927,956 - -0.4
5,927,956 - +0.4
5,927,956 - -1.2
5,927,977 + +0.2
5,927,990 + +0.4
5,927,991 - +0.5
5,928,062 - +0.9
5,928,062 - -0.1
5,928,084 + +0.6
5,928,085 - -1.4
5,928,091 - +0.3
5,928,095 - +0.3
5,928,099 - +0.1
5,928,103 + +0.8
5,928,161 + +0.7
5,928,232 + -0.3
5,928,233 - -0.6
5,928,277 + Psyr_4998 0.15 +0.5
5,928,298 + Psyr_4998 0.18 +0.6
5,928,313 + Psyr_4998 0.20 +1.5
5,928,316 - Psyr_4998 0.21 -0.1
5,928,316 - Psyr_4998 0.21 -0.9
5,928,398 + Psyr_4998 0.32 -1.8
5,928,398 + Psyr_4998 0.32 +0.3
5,928,411 + Psyr_4998 0.34 -1.1
5,928,412 - Psyr_4998 0.34 +0.8
5,928,412 - Psyr_4998 0.34 +2.0
5,928,416 + Psyr_4998 0.35 -1.4
5,928,417 - Psyr_4998 0.35 -0.3
5,928,510 + Psyr_4998 0.48 +0.3
5,928,511 - Psyr_4998 0.48 +0.4
5,928,557 + Psyr_4998 0.55 +0.2
5,928,558 - Psyr_4998 0.55 +1.3
5,928,567 + Psyr_4998 0.56 -1.5
5,928,567 + Psyr_4998 0.56 +0.3
5,928,568 - Psyr_4998 0.56 -0.5
5,928,568 - Psyr_4998 0.56 -1.1
5,928,570 - Psyr_4998 0.57 +0.8
5,928,570 - Psyr_4998 0.57 +0.6
5,928,583 - Psyr_4998 0.58 +0.4
5,928,661 + Psyr_4998 0.69 +0.9
5,928,661 + Psyr_4998 0.69 +1.0
5,928,662 - Psyr_4998 0.69 -0.1
5,928,683 + Psyr_4998 0.72 +1.3
5,928,787 - Psyr_4998 0.87 +0.9
5,928,787 - Psyr_4998 0.87 +0.8
5,928,787 - Psyr_4998 0.87 -2.4
5,928,798 + Psyr_4998 0.89 +1.2
5,928,862 + -0.5
5,928,862 + -0.6
5,928,983 + -1.3
5,928,983 + +0.8
5,928,984 - +1.7
5,928,984 - +1.0
5,928,984 - +0.4
5,928,984 - -1.4
5,928,994 - +0.9

Or see this region's nucleotide sequence