Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3337

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3336 and Psyr_3337 are separated by 244 nucleotidesPsyr_3337 and Psyr_3338 are separated by 241 nucleotides Psyr_3336: Psyr_3336 - transcriptional regulator, LacI family, at 3,991,328 to 3,992,344 _3336 Psyr_3337: Psyr_3337 - gluconate kinase, SKI family, at 3,992,589 to 3,993,116 _3337 Psyr_3338: Psyr_3338 - gluconate permease GntT, at 3,993,358 to 3,994,710 _3338 Position (kb) 3992 3993 3994Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3991.773 kb on + strand, within Psyr_3336at 3991.773 kb on + strand, within Psyr_3336at 3991.773 kb on + strand, within Psyr_3336at 3991.774 kb on - strand, within Psyr_3336at 3991.774 kb on - strand, within Psyr_3336at 3991.774 kb on - strand, within Psyr_3336at 3991.774 kb on - strand, within Psyr_3336at 3991.898 kb on + strand, within Psyr_3336at 3991.898 kb on + strand, within Psyr_3336at 3991.899 kb on - strand, within Psyr_3336at 3991.900 kb on + strand, within Psyr_3336at 3991.900 kb on + strand, within Psyr_3336at 3991.901 kb on - strand, within Psyr_3336at 3991.961 kb on - strand, within Psyr_3336at 3992.020 kb on - strand, within Psyr_3336at 3992.026 kb on - strand, within Psyr_3336at 3992.026 kb on - strand, within Psyr_3336at 3992.026 kb on - strand, within Psyr_3336at 3992.177 kb on + strand, within Psyr_3336at 3992.177 kb on + strand, within Psyr_3336at 3992.178 kb on - strand, within Psyr_3336at 3992.182 kb on - strand, within Psyr_3336at 3992.339 kb on + strandat 3992.356 kb on + strandat 3992.356 kb on + strandat 3992.356 kb on + strandat 3992.357 kb on - strandat 3992.357 kb on - strandat 3992.357 kb on - strandat 3992.361 kb on + strandat 3992.362 kb on - strandat 3992.362 kb on - strandat 3992.362 kb on - strandat 3992.488 kb on - strandat 3992.514 kb on + strandat 3992.514 kb on + strandat 3992.515 kb on - strandat 3992.603 kb on + strandat 3992.603 kb on + strandat 3992.604 kb on - strandat 3992.604 kb on - strandat 3992.609 kb on + strandat 3992.610 kb on - strandat 3992.610 kb on - strandat 3992.868 kb on + strand, within Psyr_3337at 3992.869 kb on - strand, within Psyr_3337at 3992.912 kb on - strand, within Psyr_3337at 3992.912 kb on - strand, within Psyr_3337at 3993.308 kb on + strandat 3993.308 kb on + strandat 3993.308 kb on + strandat 3993.308 kb on + strandat 3993.309 kb on - strandat 3993.313 kb on - strandat 3993.313 kb on - strandat 3993.321 kb on + strandat 3993.333 kb on - strandat 3993.340 kb on + strandat 3993.341 kb on - strandat 3993.341 kb on - strandat 3993.568 kb on - strand, within Psyr_3338at 3993.647 kb on + strand, within Psyr_3338at 3993.831 kb on - strand, within Psyr_3338

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,991,773 + Psyr_3336 0.44 +0.2
3,991,773 + Psyr_3336 0.44 -0.8
3,991,773 + Psyr_3336 0.44 +0.5
3,991,774 - Psyr_3336 0.44 +0.4
3,991,774 - Psyr_3336 0.44 +0.2
3,991,774 - Psyr_3336 0.44 +0.8
3,991,774 - Psyr_3336 0.44 +0.2
3,991,898 + Psyr_3336 0.56 -1.3
3,991,898 + Psyr_3336 0.56 -0.7
3,991,899 - Psyr_3336 0.56 +0.5
3,991,900 + Psyr_3336 0.56 -0.3
3,991,900 + Psyr_3336 0.56 +0.2
3,991,901 - Psyr_3336 0.56 +0.2
3,991,961 - Psyr_3336 0.62 -1.4
3,992,020 - Psyr_3336 0.68 +0.2
3,992,026 - Psyr_3336 0.69 +0.2
3,992,026 - Psyr_3336 0.69 +0.9
3,992,026 - Psyr_3336 0.69 -2.4
3,992,177 + Psyr_3336 0.83 +0.1
3,992,177 + Psyr_3336 0.83 -0.4
3,992,178 - Psyr_3336 0.84 +0.4
3,992,182 - Psyr_3336 0.84 -0.4
3,992,339 + -0.2
3,992,356 + +0.7
3,992,356 + -0.0
3,992,356 + -0.8
3,992,357 - -1.3
3,992,357 - +1.0
3,992,357 - -0.1
3,992,361 + -0.2
3,992,362 - +0.0
3,992,362 - +0.6
3,992,362 - -0.1
3,992,488 - +0.7
3,992,514 + -0.6
3,992,514 + -0.3
3,992,515 - +0.6
3,992,603 + +0.7
3,992,603 + +1.4
3,992,604 - -0.9
3,992,604 - +0.5
3,992,609 + +1.4
3,992,610 - -0.6
3,992,610 - +0.8
3,992,868 + Psyr_3337 0.53 -0.4
3,992,869 - Psyr_3337 0.53 -2.1
3,992,912 - Psyr_3337 0.61 -1.4
3,992,912 - Psyr_3337 0.61 +0.2
3,993,308 + +1.1
3,993,308 + +1.2
3,993,308 + +2.4
3,993,308 + +0.8
3,993,309 - +1.7
3,993,313 - -1.2
3,993,313 - +3.7
3,993,321 + +0.7
3,993,333 - +0.4
3,993,340 + -0.1
3,993,341 - -0.6
3,993,341 - +0.4
3,993,568 - Psyr_3338 0.16 -0.1
3,993,647 + Psyr_3338 0.21 +0.2
3,993,831 - Psyr_3338 0.35 +0.2

Or see this region's nucleotide sequence