Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3146

Experiment: KB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3144 and Psyr_3145 overlap by 4 nucleotidesPsyr_3145 and Psyr_3146 overlap by 4 nucleotidesPsyr_3146 and Psyr_3147 overlap by 4 nucleotidesPsyr_3147 and Psyr_3148 overlap by 1 nucleotidesPsyr_3148 and Psyr_3149 are separated by 8 nucleotides Psyr_3144: Psyr_3144 - Fimbrial assembly, at 3,770,226 to 3,771,320 _3144 Psyr_3145: Psyr_3145 - general secretion pathway protein K, putative, at 3,771,317 to 3,772,051 _3145 Psyr_3146: Psyr_3146 - general secretion pathway protein J, putative, at 3,772,048 to 3,772,680 _3146 Psyr_3147: Psyr_3147 - general secretion pathway protein I, putative, at 3,772,677 to 3,773,048 _3147 Psyr_3148: Psyr_3148 - General secretion pathway protein H, at 3,773,048 to 3,773,482 _3148 Psyr_3149: Psyr_3149 - General secretion pathway protein G, at 3,773,491 to 3,773,922 _3149 Position (kb) 3772 3773Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3771.342 kb on + strandat 3771.389 kb on + strandat 3771.440 kb on + strand, within Psyr_3145at 3771.545 kb on + strand, within Psyr_3145at 3771.551 kb on + strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.573 kb on + strand, within Psyr_3145at 3771.573 kb on + strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.615 kb on - strand, within Psyr_3145at 3771.615 kb on - strand, within Psyr_3145at 3771.719 kb on + strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.721 kb on + strand, within Psyr_3145at 3771.722 kb on - strand, within Psyr_3145at 3771.800 kb on - strand, within Psyr_3145at 3771.800 kb on - strand, within Psyr_3145at 3771.866 kb on + strand, within Psyr_3145at 3771.867 kb on - strand, within Psyr_3145at 3771.911 kb on - strand, within Psyr_3145at 3772.007 kb on + strandat 3772.008 kb on - strandat 3772.255 kb on + strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146at 3772.707 kb on + strandat 3772.712 kb on + strandat 3773.452 kb on + strandat 3773.519 kb on + strandat 3773.552 kb on + strand, within Psyr_3149at 3773.553 kb on - strand, within Psyr_3149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB
remove
3,771,342 + -0.4
3,771,389 + +0.6
3,771,440 + Psyr_3145 0.17 +1.1
3,771,545 + Psyr_3145 0.31 +1.8
3,771,551 + Psyr_3145 0.32 +0.6
3,771,552 - Psyr_3145 0.32 -0.9
3,771,552 - Psyr_3145 0.32 +0.4
3,771,552 - Psyr_3145 0.32 -2.8
3,771,552 - Psyr_3145 0.32 -0.6
3,771,573 + Psyr_3145 0.35 -0.9
3,771,573 + Psyr_3145 0.35 +0.5
3,771,574 - Psyr_3145 0.35 -1.8
3,771,574 - Psyr_3145 0.35 +0.1
3,771,574 - Psyr_3145 0.35 -0.4
3,771,574 - Psyr_3145 0.35 +1.6
3,771,574 - Psyr_3145 0.35 -1.0
3,771,615 - Psyr_3145 0.41 -1.1
3,771,615 - Psyr_3145 0.41 +0.4
3,771,719 + Psyr_3145 0.55 -0.3
3,771,720 - Psyr_3145 0.55 +0.1
3,771,720 - Psyr_3145 0.55 +0.5
3,771,720 - Psyr_3145 0.55 -0.4
3,771,720 - Psyr_3145 0.55 -0.1
3,771,720 - Psyr_3145 0.55 +0.8
3,771,721 + Psyr_3145 0.55 -0.3
3,771,722 - Psyr_3145 0.55 -0.3
3,771,800 - Psyr_3145 0.66 +0.6
3,771,800 - Psyr_3145 0.66 -1.1
3,771,866 + Psyr_3145 0.75 +1.6
3,771,867 - Psyr_3145 0.75 +0.3
3,771,911 - Psyr_3145 0.81 -0.7
3,772,007 + -2.9
3,772,008 - -0.2
3,772,255 + Psyr_3146 0.33 -0.2
3,772,256 - Psyr_3146 0.33 -1.8
3,772,256 - Psyr_3146 0.33 +1.5
3,772,256 - Psyr_3146 0.33 -2.1
3,772,707 + -0.7
3,772,712 + +1.8
3,773,452 + +2.4
3,773,519 + +1.2
3,773,552 + Psyr_3149 0.14 +0.5
3,773,553 - Psyr_3149 0.14 -1.4

Or see this region's nucleotide sequence