Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3130

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
3,752,138	-				+1.6
3,752,138	-				-1.5
3,752,194	+				-0.6
3,752,195	-				-0.9
3,752,208	+				-0.1
3,752,208	+				-0.8
3,752,209	-				+2.2
3,752,229	+				+1.7
3,752,230	-				+2.8
3,752,314	-		Psyr_3129	0.16	-0.1
3,752,314	-		Psyr_3129	0.16	-0.6
3,752,314	-		Psyr_3129	0.16	+2.3
3,752,329	-		Psyr_3129	0.18	+0.2
3,752,329	-		Psyr_3129	0.18	-1.3
3,752,416	+		Psyr_3129	0.28	+0.4
3,752,446	-		Psyr_3129	0.32	+1.4
3,752,486	-		Psyr_3129	0.36	+0.2
3,752,580	+		Psyr_3129	0.47	-0.5
3,752,581	-		Psyr_3129	0.47	+0.7
3,752,581	-		Psyr_3129	0.47	-0.6
3,752,581	-		Psyr_3129	0.47	-0.7
3,752,581	-		Psyr_3129	0.47	+1.9
3,752,581	-		Psyr_3129	0.47	+0.0
3,752,581	-		Psyr_3129	0.47	+0.7
3,752,581	-		Psyr_3129	0.47	+1.1
3,752,582	+		Psyr_3129	0.47	-0.8
3,752,662	-		Psyr_3129	0.57	+0.6
3,752,686	-		Psyr_3129	0.59	+1.6
3,752,686	-		Psyr_3129	0.59	-0.0
3,752,686	-		Psyr_3129	0.59	-1.1
3,752,686	-		Psyr_3129	0.59	+1.1
3,752,687	+		Psyr_3129	0.60	-1.1
3,752,687	+		Psyr_3129	0.60	+3.4
3,752,688	-		Psyr_3129	0.60	-3.7
3,752,691	+		Psyr_3129	0.60	+0.8
3,752,691	+		Psyr_3129	0.60	-3.3
3,752,691	+		Psyr_3129	0.60	+0.4
3,752,691	+		Psyr_3129	0.60	-2.1
3,752,692	-		Psyr_3129	0.60	+1.8
3,752,692	-		Psyr_3129	0.60	+0.1
3,752,692	-		Psyr_3129	0.60	+0.4
3,752,744	+		Psyr_3129	0.66	-2.2
3,752,745	-		Psyr_3129	0.66	+0.5
3,752,764	+		Psyr_3129	0.69	-0.8
3,752,765	-		Psyr_3129	0.69	+0.1
3,752,765	-		Psyr_3129	0.69	+0.7
3,752,774	+		Psyr_3129	0.70	-0.9
3,752,779	-		Psyr_3129	0.70	+1.2
3,752,779	-		Psyr_3129	0.70	-0.4
3,752,779	-		Psyr_3129	0.70	-1.1
3,752,841	+		Psyr_3129	0.77	-0.2
3,752,841	+		Psyr_3129	0.77	+0.2
3,752,841	+		Psyr_3129	0.77	-0.1
3,752,841	+		Psyr_3129	0.77	+0.7
3,752,842	-		Psyr_3129	0.78	-0.2
3,752,842	-		Psyr_3129	0.78	-0.2
3,752,842	-		Psyr_3129	0.78	-0.1
3,752,877	+		Psyr_3129	0.82	-0.8
3,752,878	-		Psyr_3129	0.82	+1.1
3,752,878	-		Psyr_3129	0.82	-0.4
3,752,878	-		Psyr_3129	0.82	+0.2
3,752,878	-		Psyr_3129	0.82	-2.9
3,752,971	+				+1.0
3,752,971	+				-0.0
3,752,972	-				+0.5
3,752,972	-				-0.6
3,752,972	-				-0.2
3,752,972	-				+0.2
3,753,124	+				-0.8
3,753,125	-				+2.1
3,753,208	+				+0.7
3,753,209	-				+1.8
3,753,227	+				+1.5
3,753,246	-				-0.3
3,753,246	-				+2.2
3,753,324	-		Psyr_3130	0.16	+2.0
3,753,559	+		Psyr_3130	0.36	+1.6
3,753,559	+		Psyr_3130	0.36	+2.6
3,753,559	+		Psyr_3130	0.36	-0.8
3,753,560	-		Psyr_3130	0.36	+3.1
3,753,594	+		Psyr_3130	0.39	-2.5
3,753,594	+		Psyr_3130	0.39	+0.6
3,753,700	+		Psyr_3130	0.48	+0.2
3,753,700	+		Psyr_3130	0.48	+0.8
3,753,703	-		Psyr_3130	0.48	+0.6
3,753,745	+		Psyr_3130	0.52	-0.0
3,754,330	-				+0.1
3,754,450	+		Psyr_3131	0.12	+0.1
3,754,451	-		Psyr_3131	0.12	+0.9
3,754,506	+		Psyr_3131	0.17	+0.1
3,754,713	+		Psyr_3131	0.36	+0.2
3,754,713	+		Psyr_3131	0.36	-0.1
3,754,713	+		Psyr_3131	0.36	-0.5
3,754,713	+		Psyr_3131	0.36	+1.0
3,754,713	+		Psyr_3131	0.36	+0.7
3,754,713	+		Psyr_3131	0.36	-0.0
3,754,713	+		Psyr_3131	0.36	+2.9
3,754,714	-		Psyr_3131	0.36	+2.0
3,754,714	-		Psyr_3131	0.36	+0.2
3,754,714	-		Psyr_3131	0.36	+2.6
3,754,714	-		Psyr_3131	0.36	-1.1
3,754,833	+		Psyr_3131	0.47	+0.8
3,755,220	+		Psyr_3131	0.83	-0.5
3,755,220	+		Psyr_3131	0.83	+0.7
3,755,220	+		Psyr_3131	0.83	+1.2
3,755,221	-		Psyr_3131	0.83	-0.8
3,755,279	-		Psyr_3131	0.88	-0.2