Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2648

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2646 and Psyr_2647 are separated by 88 nucleotidesPsyr_2647 and Psyr_2648 overlap by 16 nucleotidesPsyr_2648 and Psyr_2649 are separated by 81 nucleotides Psyr_2646: Psyr_2646 - Radical SAM, at 3,216,092 to 3,218,263 _2646 Psyr_2647: Psyr_2647 - hypothetical protein, at 3,218,352 to 3,219,233 _2647 Psyr_2648: Psyr_2648 - hypothetical protein, at 3,219,218 to 3,220,411 _2648 Psyr_2649: Psyr_2649 - hypothetical protein, at 3,220,493 to 3,221,476 _2649 Position (kb) 3219 3220 3221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3218.295 kb on + strandat 3218.296 kb on - strandat 3218.327 kb on + strandat 3218.327 kb on + strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.379 kb on + strandat 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.493 kb on - strand, within Psyr_2647at 3218.549 kb on + strand, within Psyr_2647at 3218.550 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.790 kb on - strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.909 kb on + strand, within Psyr_2647at 3218.910 kb on - strand, within Psyr_2647at 3218.985 kb on + strandat 3218.985 kb on + strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3219.012 kb on - strand, within Psyr_2647at 3219.041 kb on - strand, within Psyr_2647at 3219.095 kb on - strand, within Psyr_2647at 3219.235 kb on + strandat 3219.272 kb on - strandat 3219.272 kb on - strandat 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.426 kb on - strand, within Psyr_2648at 3219.426 kb on - strandat 3219.426 kb on - strand, within Psyr_2648at 3219.426 kb on - strand, within Psyr_2648at 3219.430 kb on + strand, within Psyr_2648at 3219.530 kb on + strand, within Psyr_2648at 3219.531 kb on - strand, within Psyr_2648at 3219.531 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.563 kb on + strand, within Psyr_2648at 3219.563 kb on + strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.625 kb on - strand, within Psyr_2648at 3219.674 kb on - strand, within Psyr_2648at 3219.763 kb on + strand, within Psyr_2648at 3219.764 kb on - strand, within Psyr_2648at 3219.764 kb on - strand, within Psyr_2648at 3219.766 kb on + strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.866 kb on - strand, within Psyr_2648at 3219.866 kb on - strand, within Psyr_2648at 3219.874 kb on + strand, within Psyr_2648at 3219.888 kb on - strand, within Psyr_2648at 3219.888 kb on - strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.937 kb on - strand, within Psyr_2648at 3219.937 kb on - strand, within Psyr_2648at 3219.945 kb on + strand, within Psyr_2648at 3219.945 kb on + strand, within Psyr_2648at 3219.946 kb on - strand, within Psyr_2648at 3219.970 kb on + strand, within Psyr_2648at 3219.970 kb on + strand, within Psyr_2648at 3219.987 kb on - strand, within Psyr_2648at 3219.987 kb on - strand, within Psyr_2648at 3220.020 kb on + strand, within Psyr_2648at 3220.021 kb on - strand, within Psyr_2648at 3220.035 kb on - strand, within Psyr_2648at 3220.035 kb on - strand, within Psyr_2648at 3220.047 kb on + strand, within Psyr_2648at 3220.047 kb on + strand, within Psyr_2648at 3220.048 kb on - strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.122 kb on - strand, within Psyr_2648at 3220.152 kb on - strand, within Psyr_2648at 3220.152 kb on - strand, within Psyr_2648at 3220.246 kb on + strand, within Psyr_2648at 3220.436 kb on + strandat 3220.436 kb on + strandat 3220.437 kb on - strandat 3220.437 kb on - strandat 3220.594 kb on + strand, within Psyr_2649at 3220.594 kb on + strand, within Psyr_2649at 3220.594 kb on + strand, within Psyr_2649at 3220.594 kb on + strand, within Psyr_2649at 3220.595 kb on - strand, within Psyr_2649at 3220.595 kb on - strand, within Psyr_2649at 3220.595 kb on - strand, within Psyr_2649at 3220.595 kb on - strand, within Psyr_2649at 3220.598 kb on + strand, within Psyr_2649at 3220.599 kb on - strand, within Psyr_2649at 3220.636 kb on + strand, within Psyr_2649at 3220.637 kb on - strand, within Psyr_2649at 3220.637 kb on - strand, within Psyr_2649at 3220.637 kb on - strand, within Psyr_2649at 3220.687 kb on + strand, within Psyr_2649at 3220.688 kb on - strandat 3220.688 kb on - strand, within Psyr_2649at 3220.689 kb on + strand, within Psyr_2649at 3220.689 kb on + strand, within Psyr_2649at 3220.689 kb on + strand, within Psyr_2649at 3220.690 kb on - strand, within Psyr_2649at 3220.690 kb on - strand, within Psyr_2649at 3220.696 kb on + strand, within Psyr_2649at 3220.696 kb on + strand, within Psyr_2649at 3220.696 kb on + strand, within Psyr_2649at 3220.741 kb on + strand, within Psyr_2649at 3220.742 kb on - strand, within Psyr_2649at 3220.765 kb on - strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.030 kb on + strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.031 kb on - strand, within Psyr_2649at 3221.032 kb on + strand, within Psyr_2649at 3221.032 kb on + strand, within Psyr_2649at 3221.033 kb on - strand, within Psyr_2649at 3221.033 kb on - strand, within Psyr_2649at 3221.033 kb on - strand, within Psyr_2649at 3221.033 kb on - strandat 3221.101 kb on + strand, within Psyr_2649at 3221.137 kb on - strand, within Psyr_2649at 3221.232 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.361 kb on + strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.362 kb on - strand, within Psyr_2649at 3221.378 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,218,295 + -0.4
3,218,296 - +0.1
3,218,327 + +0.4
3,218,327 + -0.4
3,218,328 - -1.7
3,218,328 - -0.7
3,218,328 - -0.3
3,218,328 - -0.3
3,218,379 + +1.6
3,218,457 - Psyr_2647 0.12 +1.0
3,218,457 - Psyr_2647 0.12 +2.0
3,218,457 - Psyr_2647 0.12 +0.4
3,218,492 + Psyr_2647 0.16 +0.4
3,218,492 + Psyr_2647 0.16 -0.5
3,218,493 - Psyr_2647 0.16 -0.5
3,218,549 + Psyr_2647 0.22 -2.5
3,218,550 - Psyr_2647 0.22 -0.9
3,218,577 - Psyr_2647 0.26 -2.8
3,218,577 - Psyr_2647 0.26 +1.7
3,218,790 - Psyr_2647 0.50 -0.9
3,218,806 + Psyr_2647 0.51 -0.6
3,218,806 + Psyr_2647 0.51 -0.3
3,218,806 + Psyr_2647 0.51 -1.1
3,218,806 + Psyr_2647 0.51 +0.4
3,218,825 + Psyr_2647 0.54 -0.7
3,218,825 + Psyr_2647 0.54 -1.1
3,218,826 - Psyr_2647 0.54 -1.8
3,218,826 - Psyr_2647 0.54 -0.9
3,218,826 - Psyr_2647 0.54 +0.5
3,218,826 - Psyr_2647 0.54 -1.9
3,218,909 + Psyr_2647 0.63 +0.5
3,218,910 - Psyr_2647 0.63 +1.6
3,218,985 + +0.4
3,218,985 + Psyr_2647 0.72 +1.0
3,218,986 - Psyr_2647 0.72 +0.3
3,218,986 - Psyr_2647 0.72 +1.4
3,218,986 - Psyr_2647 0.72 +0.5
3,219,012 - Psyr_2647 0.75 -0.2
3,219,041 - Psyr_2647 0.78 -0.7
3,219,095 - Psyr_2647 0.84 -0.3
3,219,235 + +0.5
3,219,272 - +1.1
3,219,272 - +0.7
3,219,425 + Psyr_2648 0.17 -0.7
3,219,425 + Psyr_2648 0.17 +0.0
3,219,425 + Psyr_2648 0.17 +0.8
3,219,425 + Psyr_2648 0.17 +0.1
3,219,425 + Psyr_2648 0.17 +0.4
3,219,426 - Psyr_2648 0.17 +0.2
3,219,426 - +1.4
3,219,426 - Psyr_2648 0.17 +0.2
3,219,426 - Psyr_2648 0.17 -1.0
3,219,430 + Psyr_2648 0.18 -0.0
3,219,530 + Psyr_2648 0.26 +1.2
3,219,531 - Psyr_2648 0.26 +0.4
3,219,531 - Psyr_2648 0.26 +1.1
3,219,552 - Psyr_2648 0.28 -0.5
3,219,552 - Psyr_2648 0.28 +0.9
3,219,552 - Psyr_2648 0.28 -0.3
3,219,563 + Psyr_2648 0.29 -0.2
3,219,563 + Psyr_2648 0.29 -1.5
3,219,564 - Psyr_2648 0.29 +0.5
3,219,564 - Psyr_2648 0.29 -0.7
3,219,564 - Psyr_2648 0.29 +0.1
3,219,577 + Psyr_2648 0.30 -0.3
3,219,577 + Psyr_2648 0.30 -0.1
3,219,577 + Psyr_2648 0.30 +1.6
3,219,578 - Psyr_2648 0.30 +1.2
3,219,578 - Psyr_2648 0.30 +0.6
3,219,578 - Psyr_2648 0.30 +0.4
3,219,578 - Psyr_2648 0.30 -0.1
3,219,625 - Psyr_2648 0.34 +0.6
3,219,674 - Psyr_2648 0.38 -0.1
3,219,763 + Psyr_2648 0.46 +1.3
3,219,764 - Psyr_2648 0.46 +2.7
3,219,764 - Psyr_2648 0.46 +0.3
3,219,766 + Psyr_2648 0.46 -1.6
3,219,767 - Psyr_2648 0.46 +0.1
3,219,767 - Psyr_2648 0.46 +0.9
3,219,767 - Psyr_2648 0.46 +1.0
3,219,767 - Psyr_2648 0.46 +0.1
3,219,861 + Psyr_2648 0.54 +0.2
3,219,861 + Psyr_2648 0.54 -0.4
3,219,861 + Psyr_2648 0.54 -1.1
3,219,862 - Psyr_2648 0.54 -0.6
3,219,862 - Psyr_2648 0.54 +0.4
3,219,862 - Psyr_2648 0.54 -2.5
3,219,862 - Psyr_2648 0.54 +0.0
3,219,862 - Psyr_2648 0.54 +0.4
3,219,862 - Psyr_2648 0.54 +0.1
3,219,865 + Psyr_2648 0.54 -2.0
3,219,865 + Psyr_2648 0.54 +1.5
3,219,865 + Psyr_2648 0.54 +1.7
3,219,865 + Psyr_2648 0.54 +2.7
3,219,866 - Psyr_2648 0.54 +0.4
3,219,866 - Psyr_2648 0.54 -0.8
3,219,874 + Psyr_2648 0.55 -1.5
3,219,888 - Psyr_2648 0.56 -1.2
3,219,888 - Psyr_2648 0.56 -0.2
3,219,936 + Psyr_2648 0.60 +2.4
3,219,936 + Psyr_2648 0.60 +1.6
3,219,936 + Psyr_2648 0.60 -1.8
3,219,936 + Psyr_2648 0.60 +0.4
3,219,937 - Psyr_2648 0.60 -2.1
3,219,937 - Psyr_2648 0.60 +0.8
3,219,945 + Psyr_2648 0.61 +1.9
3,219,945 + Psyr_2648 0.61 -0.6
3,219,946 - Psyr_2648 0.61 +3.2
3,219,970 + Psyr_2648 0.63 -0.1
3,219,970 + Psyr_2648 0.63 -0.5
3,219,987 - Psyr_2648 0.64 -0.5
3,219,987 - Psyr_2648 0.64 -0.5
3,220,020 + Psyr_2648 0.67 +0.5
3,220,021 - Psyr_2648 0.67 -1.7
3,220,035 - Psyr_2648 0.68 -0.2
3,220,035 - Psyr_2648 0.68 -3.0
3,220,047 + Psyr_2648 0.69 -0.7
3,220,047 + Psyr_2648 0.69 -0.3
3,220,048 - Psyr_2648 0.70 -1.3
3,220,121 + Psyr_2648 0.76 -0.0
3,220,121 + Psyr_2648 0.76 +1.5
3,220,121 + Psyr_2648 0.76 -0.1
3,220,122 - Psyr_2648 0.76 +0.9
3,220,152 - Psyr_2648 0.78 +0.1
3,220,152 - Psyr_2648 0.78 -0.1
3,220,246 + Psyr_2648 0.86 +0.8
3,220,436 + -0.0
3,220,436 + +0.4
3,220,437 - +0.1
3,220,437 - +0.8
3,220,594 + Psyr_2649 0.10 +0.2
3,220,594 + Psyr_2649 0.10 +0.4
3,220,594 + Psyr_2649 0.10 +0.5
3,220,594 + Psyr_2649 0.10 -1.5
3,220,595 - Psyr_2649 0.10 -0.3
3,220,595 - Psyr_2649 0.10 +0.2
3,220,595 - Psyr_2649 0.10 +0.4
3,220,595 - Psyr_2649 0.10 +0.2
3,220,598 + Psyr_2649 0.11 -0.0
3,220,599 - Psyr_2649 0.11 -0.6
3,220,636 + Psyr_2649 0.15 -0.5
3,220,637 - Psyr_2649 0.15 -0.2
3,220,637 - Psyr_2649 0.15 +1.7
3,220,637 - Psyr_2649 0.15 -2.0
3,220,687 + Psyr_2649 0.20 -2.0
3,220,688 - +0.4
3,220,688 - Psyr_2649 0.20 -0.3
3,220,689 + Psyr_2649 0.20 -1.9
3,220,689 + Psyr_2649 0.20 -0.1
3,220,689 + Psyr_2649 0.20 -0.3
3,220,690 - Psyr_2649 0.20 +0.0
3,220,690 - Psyr_2649 0.20 -0.5
3,220,696 + Psyr_2649 0.21 -0.4
3,220,696 + Psyr_2649 0.21 +0.6
3,220,696 + Psyr_2649 0.21 -1.8
3,220,741 + Psyr_2649 0.25 -0.4
3,220,742 - Psyr_2649 0.25 -0.2
3,220,765 - Psyr_2649 0.28 -0.2
3,221,030 + Psyr_2649 0.55 +0.8
3,221,030 + Psyr_2649 0.55 -2.1
3,221,030 + Psyr_2649 0.55 +0.2
3,221,030 + Psyr_2649 0.55 +0.7
3,221,030 + Psyr_2649 0.55 -0.6
3,221,030 + Psyr_2649 0.55 +0.3
3,221,030 + Psyr_2649 0.55 -1.6
3,221,030 + Psyr_2649 0.55 +0.6
3,221,030 + Psyr_2649 0.55 +0.7
3,221,030 + Psyr_2649 0.55 +0.1
3,221,031 - Psyr_2649 0.55 +1.4
3,221,031 - Psyr_2649 0.55 +0.2
3,221,031 - Psyr_2649 0.55 -0.1
3,221,031 - Psyr_2649 0.55 +0.6
3,221,031 - Psyr_2649 0.55 -0.2
3,221,031 - Psyr_2649 0.55 +0.1
3,221,031 - Psyr_2649 0.55 -1.6
3,221,031 - Psyr_2649 0.55 -0.1
3,221,032 + Psyr_2649 0.55 +0.2
3,221,032 + Psyr_2649 0.55 +0.2
3,221,033 - Psyr_2649 0.55 -0.3
3,221,033 - Psyr_2649 0.55 -0.5
3,221,033 - Psyr_2649 0.55 +0.2
3,221,033 - +2.4
3,221,101 + Psyr_2649 0.62 -0.0
3,221,137 - Psyr_2649 0.65 +0.1
3,221,232 + Psyr_2649 0.75 +0.2
3,221,361 + Psyr_2649 0.88 -0.7
3,221,361 + Psyr_2649 0.88 +0.7
3,221,361 + Psyr_2649 0.88 +0.2
3,221,361 + Psyr_2649 0.88 +0.2
3,221,361 + Psyr_2649 0.88 +3.7
3,221,361 + Psyr_2649 0.88 -1.9
3,221,361 + Psyr_2649 0.88 +0.2
3,221,361 + Psyr_2649 0.88 -1.8
3,221,361 + Psyr_2649 0.88 +0.9
3,221,361 + Psyr_2649 0.88 +0.0
3,221,361 + Psyr_2649 0.88 -0.3
3,221,361 + Psyr_2649 0.88 -0.1
3,221,361 + Psyr_2649 0.88 +0.1
3,221,361 + Psyr_2649 0.88 -0.4
3,221,361 + Psyr_2649 0.88 -0.5
3,221,361 + Psyr_2649 0.88 -0.5
3,221,361 + Psyr_2649 0.88 +0.5
3,221,361 + Psyr_2649 0.88 +0.9
3,221,361 + Psyr_2649 0.88 +0.9
3,221,361 + Psyr_2649 0.88 +0.9
3,221,362 - Psyr_2649 0.88 -0.2
3,221,362 - Psyr_2649 0.88 -0.6
3,221,362 - Psyr_2649 0.88 -1.1
3,221,362 - Psyr_2649 0.88 -1.1
3,221,362 - Psyr_2649 0.88 -0.4
3,221,362 - Psyr_2649 0.88 -0.6
3,221,362 - Psyr_2649 0.88 -2.3
3,221,362 - Psyr_2649 0.88 +1.4
3,221,362 - Psyr_2649 0.88 +0.4
3,221,362 - Psyr_2649 0.88 +0.4
3,221,362 - Psyr_2649 0.88 +0.9
3,221,362 - Psyr_2649 0.88 +1.9
3,221,362 - Psyr_2649 0.88 -0.4
3,221,362 - Psyr_2649 0.88 +1.2
3,221,378 - +1.0

Or see this region's nucleotide sequence