Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2005

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2004 and Psyr_2005 are separated by 361 nucleotidesPsyr_2005 and Psyr_2006 overlap by 7 nucleotidesPsyr_2006 and Psyr_2007 are separated by 3 nucleotides Psyr_2004: Psyr_2004 - citrate synthase, at 2,324,521 to 2,325,810 _2004 Psyr_2005: Psyr_2005 - succinate dehydrogenase subunit C, at 2,326,172 to 2,326,546 _2005 Psyr_2006: Psyr_2006 - succinate dehydrogenase subunit D, at 2,326,540 to 2,326,908 _2006 Psyr_2007: Psyr_2007 - succinate dehydrogenase subunit A, at 2,326,912 to 2,328,684 _2007 Position (kb) 2326 2327Strain fitness (log2 ratio) -2 -1 0 1 2at 2325.825 kb on - strandat 2325.872 kb on - strandat 2325.950 kb on + strandat 2326.026 kb on + strandat 2326.026 kb on + strandat 2326.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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2,325,825 - +2.0
2,325,872 - -1.9
2,325,950 + -2.5
2,326,026 + -0.5
2,326,026 + -0.8
2,326,034 + -0.2

Or see this region's nucleotide sequence