Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2004

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2002 and Psyr_2003 are separated by 74 nucleotidesPsyr_2003 and Psyr_2004 are separated by 66 nucleotidesPsyr_2004 and Psyr_2005 are separated by 361 nucleotidesPsyr_2005 and Psyr_2006 overlap by 7 nucleotides Psyr_2002: Psyr_2002 - Protein of unknown function UPF0153, at 2,323,529 to 2,323,786 _2002 Psyr_2003: Psyr_2003 - conserved hypothetical protein, at 2,323,861 to 2,324,454 _2003 Psyr_2004: Psyr_2004 - citrate synthase, at 2,324,521 to 2,325,810 _2004 Psyr_2005: Psyr_2005 - succinate dehydrogenase subunit C, at 2,326,172 to 2,326,546 _2005 Psyr_2006: Psyr_2006 - succinate dehydrogenase subunit D, at 2,326,540 to 2,326,908 _2006 Position (kb) 2324 2325 2326Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2323.563 kb on + strand, within Psyr_2002at 2323.856 kb on - strandat 2323.886 kb on + strandat 2323.886 kb on + strandat 2323.887 kb on - strandat 2323.887 kb on - strandat 2323.981 kb on + strand, within Psyr_2003at 2323.981 kb on + strand, within Psyr_2003at 2323.982 kb on - strand, within Psyr_2003at 2323.990 kb on + strand, within Psyr_2003at 2323.991 kb on - strand, within Psyr_2003at 2323.999 kb on - strand, within Psyr_2003at 2324.021 kb on + strand, within Psyr_2003at 2324.021 kb on + strand, within Psyr_2003at 2324.021 kb on + strand, within Psyr_2003at 2324.128 kb on + strand, within Psyr_2003at 2324.128 kb on + strand, within Psyr_2003at 2324.129 kb on - strand, within Psyr_2003at 2324.142 kb on + strand, within Psyr_2003at 2324.143 kb on - strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.263 kb on + strand, within Psyr_2003at 2324.263 kb on + strand, within Psyr_2003at 2324.264 kb on - strand, within Psyr_2003at 2324.264 kb on - strand, within Psyr_2003at 2324.335 kb on + strand, within Psyr_2003at 2324.412 kb on + strandat 2324.412 kb on + strandat 2324.412 kb on + strandat 2324.413 kb on - strandat 2324.475 kb on + strandat 2324.522 kb on + strandat 2324.523 kb on - strandat 2325.825 kb on - strandat 2325.872 kb on - strandat 2325.950 kb on + strandat 2326.026 kb on + strandat 2326.026 kb on + strandat 2326.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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2,323,563 + Psyr_2002 0.13 +3.4
2,323,856 - -1.6
2,323,886 + +2.1
2,323,886 + +0.4
2,323,887 - -0.1
2,323,887 - -0.3
2,323,981 + Psyr_2003 0.20 -0.1
2,323,981 + Psyr_2003 0.20 -0.3
2,323,982 - Psyr_2003 0.20 +1.7
2,323,990 + Psyr_2003 0.22 +0.5
2,323,991 - Psyr_2003 0.22 +0.2
2,323,999 - Psyr_2003 0.23 -0.4
2,324,021 + Psyr_2003 0.27 -0.6
2,324,021 + Psyr_2003 0.27 +2.6
2,324,021 + Psyr_2003 0.27 -0.5
2,324,128 + Psyr_2003 0.45 +1.5
2,324,128 + Psyr_2003 0.45 -0.6
2,324,129 - Psyr_2003 0.45 +0.7
2,324,142 + Psyr_2003 0.47 +1.6
2,324,143 - Psyr_2003 0.47 +0.8
2,324,242 + Psyr_2003 0.64 -1.9
2,324,242 + Psyr_2003 0.64 -0.3
2,324,242 + Psyr_2003 0.64 -0.0
2,324,242 + Psyr_2003 0.64 -1.3
2,324,242 + Psyr_2003 0.64 +0.3
2,324,242 + Psyr_2003 0.64 -0.2
2,324,242 + Psyr_2003 0.64 +1.1
2,324,242 + Psyr_2003 0.64 +0.8
2,324,242 + Psyr_2003 0.64 +0.7
2,324,242 + Psyr_2003 0.64 +0.8
2,324,242 + Psyr_2003 0.64 -1.2
2,324,243 - Psyr_2003 0.64 -0.8
2,324,243 - Psyr_2003 0.64 +0.1
2,324,243 - Psyr_2003 0.64 +0.6
2,324,243 - Psyr_2003 0.64 +0.8
2,324,243 - Psyr_2003 0.64 +1.7
2,324,243 - Psyr_2003 0.64 +1.0
2,324,243 - Psyr_2003 0.64 +0.6
2,324,243 - Psyr_2003 0.64 -0.6
2,324,243 - Psyr_2003 0.64 +2.2
2,324,243 - Psyr_2003 0.64 +0.3
2,324,243 - Psyr_2003 0.64 +2.6
2,324,263 + Psyr_2003 0.68 -2.4
2,324,263 + Psyr_2003 0.68 +3.2
2,324,264 - Psyr_2003 0.68 +0.4
2,324,264 - Psyr_2003 0.68 +0.4
2,324,335 + Psyr_2003 0.80 +1.1
2,324,412 + -0.0
2,324,412 + +0.7
2,324,412 + +1.7
2,324,413 - -0.8
2,324,475 + +1.2
2,324,522 + -0.8
2,324,523 - -1.0
2,325,825 - +2.0
2,325,872 - -1.9
2,325,950 + -2.5
2,326,026 + -0.5
2,326,026 + -0.8
2,326,034 + -0.2

Or see this region's nucleotide sequence