Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1649 and Psyr_1650 overlap by 1 nucleotides Psyr_1650 and Psyr_1651 are separated by 20 nucleotides Psyr_1651 and Psyr_1652 are separated by 19 nucleotides Psyr_1652 and Psyr_1653 overlap by 8 nucleotides
Psyr_1649: Psyr_1649 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,853,805 to 1,855,049
_1649
Psyr_1650: Psyr_1650 - aminodeoxychorismate lyase apoprotein, at 1,855,049 to 1,855,864
_1650
Psyr_1651: Psyr_1651 - Protein of unknown function DUF175, at 1,855,885 to 1,857,000
_1651
Psyr_1652: Psyr_1652 - thymidylate kinase, at 1,857,020 to 1,857,652
_1652
Psyr_1653: Psyr_1653 - DNA polymerase III, delta prime subunit, at 1,857,645 to 1,858,631
_1653
Position (kb) 1855
1856
1857
1858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1855.047 kb on + strand at 1855.491 kb on + strand, within Psyr_1650 at 1855.563 kb on + strand, within Psyr_1650 at 1855.563 kb on + strand, within Psyr_1650 at 1855.574 kb on + strand, within Psyr_1650 at 1855.749 kb on + strand, within Psyr_1650 at 1855.763 kb on + strand, within Psyr_1650 at 1855.880 kb on + strand at 1856.315 kb on + strand, within Psyr_1651 at 1856.315 kb on + strand, within Psyr_1651 at 1856.362 kb on + strand, within Psyr_1651 at 1856.368 kb on + strand, within Psyr_1651 at 1856.368 kb on + strand, within Psyr_1651 at 1856.410 kb on + strand, within Psyr_1651 at 1856.410 kb on + strand, within Psyr_1651 at 1856.412 kb on + strand, within Psyr_1651 at 1856.429 kb on + strand, within Psyr_1651 at 1856.429 kb on + strand, within Psyr_1651 at 1856.470 kb on + strand, within Psyr_1651 at 1856.482 kb on + strand, within Psyr_1651 at 1856.549 kb on + strand, within Psyr_1651 at 1856.614 kb on + strand, within Psyr_1651 at 1856.632 kb on + strand, within Psyr_1651 at 1856.632 kb on + strand, within Psyr_1651 at 1856.677 kb on + strand, within Psyr_1651 at 1856.677 kb on + strand, within Psyr_1651 at 1856.677 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.686 kb on + strand, within Psyr_1651 at 1856.779 kb on + strand, within Psyr_1651
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 1,855,047 + -2.8 1,855,491 + Psyr_1650 0.54 -2.2 1,855,563 + Psyr_1650 0.63 -0.8 1,855,563 + Psyr_1650 0.63 -2.9 1,855,574 + Psyr_1650 0.64 -2.5 1,855,749 + Psyr_1650 0.86 -1.0 1,855,763 + Psyr_1650 0.88 -1.5 1,855,880 + +1.7 1,856,315 + Psyr_1651 0.39 -0.3 1,856,315 + Psyr_1651 0.39 +0.6 1,856,362 + Psyr_1651 0.43 +1.6 1,856,368 + Psyr_1651 0.43 -0.0 1,856,368 + Psyr_1651 0.43 +0.1 1,856,410 + Psyr_1651 0.47 +0.5 1,856,410 + Psyr_1651 0.47 -0.7 1,856,412 + Psyr_1651 0.47 -0.5 1,856,429 + Psyr_1651 0.49 -0.3 1,856,429 + Psyr_1651 0.49 +0.9 1,856,470 + Psyr_1651 0.52 +0.3 1,856,482 + Psyr_1651 0.53 +3.5 1,856,549 + Psyr_1651 0.59 -0.8 1,856,614 + Psyr_1651 0.65 +0.5 1,856,632 + Psyr_1651 0.67 +0.8 1,856,632 + Psyr_1651 0.67 -1.5 1,856,677 + Psyr_1651 0.71 -0.5 1,856,677 + Psyr_1651 0.71 -0.8 1,856,677 + Psyr_1651 0.71 +1.8 1,856,686 + Psyr_1651 0.72 -0.8 1,856,686 + Psyr_1651 0.72 -0.4 1,856,686 + Psyr_1651 0.72 +0.6 1,856,686 + Psyr_1651 0.72 -0.6 1,856,686 + Psyr_1651 0.72 -2.8 1,856,686 + Psyr_1651 0.72 -3.0 1,856,686 + Psyr_1651 0.72 -0.1 1,856,686 + Psyr_1651 0.72 +1.6 1,856,779 + Psyr_1651 0.80 -0.1
Or see this region's nucleotide sequence