Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1545 and Psyr_1546 are separated by 66 nucleotides Psyr_1546 and Psyr_1547 are separated by 9 nucleotides Psyr_1547 and Psyr_1548 are separated by 325 nucleotides
Psyr_1545: Psyr_1545 - Protein of unknown function UPF0118, at 1,738,835 to 1,739,905
_1545
Psyr_1546: Psyr_1546 - Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, at 1,739,972 to 1,740,445
_1546
Psyr_1547: Psyr_1547 - glycine cleavage system transcriptional repressor, at 1,740,455 to 1,741,018
_1547
Psyr_1548: Psyr_1548 - dihydrodipicolinate synthase, at 1,741,344 to 1,742,222
_1548
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.468 kb on + strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.469 kb on - strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.470 kb on + strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.471 kb on - strand, within Psyr_1545 at 1739.498 kb on - strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.516 kb on + strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.517 kb on - strand, within Psyr_1545 at 1739.546 kb on + strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.547 kb on - strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.594 kb on + strand, within Psyr_1545 at 1739.595 kb on - strand, within Psyr_1545 at 1739.672 kb on + strand, within Psyr_1545 at 1739.673 kb on - strand, within Psyr_1545 at 1740.002 kb on + strand at 1740.002 kb on + strand at 1740.003 kb on - strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.005 kb on + strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.006 kb on - strand at 1740.102 kb on + strand, within Psyr_1546 at 1740.102 kb on + strand, within Psyr_1546 at 1740.102 kb on + strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.103 kb on - strand, within Psyr_1546 at 1740.114 kb on + strand, within Psyr_1546 at 1740.343 kb on - strand, within Psyr_1546 at 1740.343 kb on - strand, within Psyr_1546 at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.431 kb on + strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.432 kb on - strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.456 kb on + strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.457 kb on - strand at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.618 kb on + strand, within Psyr_1547 at 1740.619 kb on - strand, within Psyr_1547 at 1740.714 kb on + strand, within Psyr_1547 at 1740.715 kb on - strand, within Psyr_1547 at 1740.723 kb on + strand, within Psyr_1547 at 1740.724 kb on - strand, within Psyr_1547 at 1741.029 kb on + strand at 1741.095 kb on + strand at 1741.095 kb on + strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.096 kb on - strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.133 kb on + strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.134 kb on - strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.286 kb on + strand at 1741.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 1,739,468 + Psyr_1545 0.59 -0.1 1,739,468 + Psyr_1545 0.59 +0.4 1,739,468 + Psyr_1545 0.59 -0.1 1,739,468 + Psyr_1545 0.59 -1.6 1,739,468 + Psyr_1545 0.59 +0.4 1,739,468 + Psyr_1545 0.59 -0.3 1,739,468 + Psyr_1545 0.59 +0.1 1,739,468 + Psyr_1545 0.59 -1.0 1,739,468 + Psyr_1545 0.59 +1.1 1,739,468 + Psyr_1545 0.59 +0.5 1,739,468 + Psyr_1545 0.59 -2.3 1,739,468 + Psyr_1545 0.59 -0.6 1,739,468 + Psyr_1545 0.59 -0.1 1,739,468 + Psyr_1545 0.59 +0.4 1,739,468 + Psyr_1545 0.59 +0.1 1,739,468 + Psyr_1545 0.59 -0.1 1,739,468 + Psyr_1545 0.59 -0.6 1,739,469 - Psyr_1545 0.59 -0.1 1,739,469 - Psyr_1545 0.59 -0.1 1,739,469 - Psyr_1545 0.59 -0.8 1,739,469 - Psyr_1545 0.59 -0.4 1,739,469 - Psyr_1545 0.59 +1.4 1,739,469 - Psyr_1545 0.59 -0.2 1,739,469 - Psyr_1545 0.59 -0.1 1,739,469 - Psyr_1545 0.59 -3.4 1,739,469 - Psyr_1545 0.59 -0.8 1,739,469 - Psyr_1545 0.59 -0.4 1,739,469 - Psyr_1545 0.59 +0.2 1,739,469 - Psyr_1545 0.59 +0.1 1,739,469 - Psyr_1545 0.59 -0.1 1,739,469 - Psyr_1545 0.59 -0.4 1,739,470 + Psyr_1545 0.59 -0.3 1,739,470 + Psyr_1545 0.59 -0.3 1,739,470 + Psyr_1545 0.59 +0.7 1,739,470 + Psyr_1545 0.59 -0.4 1,739,470 + Psyr_1545 0.59 +0.2 1,739,471 - Psyr_1545 0.59 -0.4 1,739,471 - Psyr_1545 0.59 +0.6 1,739,471 - Psyr_1545 0.59 +0.2 1,739,471 - Psyr_1545 0.59 -2.7 1,739,498 - Psyr_1545 0.62 -0.5 1,739,516 + Psyr_1545 0.64 +0.6 1,739,516 + Psyr_1545 0.64 +0.2 1,739,516 + Psyr_1545 0.64 -0.8 1,739,516 + Psyr_1545 0.64 +0.1 1,739,516 + Psyr_1545 0.64 +0.4 1,739,516 + Psyr_1545 0.64 +0.7 1,739,516 + Psyr_1545 0.64 -1.8 1,739,517 - Psyr_1545 0.64 +1.2 1,739,517 - Psyr_1545 0.64 -1.4 1,739,517 - Psyr_1545 0.64 -0.2 1,739,517 - Psyr_1545 0.64 -1.9 1,739,517 - Psyr_1545 0.64 -2.0 1,739,517 - Psyr_1545 0.64 -0.7 1,739,546 + Psyr_1545 0.66 +0.6 1,739,547 - Psyr_1545 0.66 -1.1 1,739,547 - Psyr_1545 0.66 -0.7 1,739,547 - Psyr_1545 0.66 +1.6 1,739,594 + Psyr_1545 0.71 +0.3 1,739,594 + Psyr_1545 0.71 +2.7 1,739,594 + Psyr_1545 0.71 -0.2 1,739,595 - Psyr_1545 0.71 -0.3 1,739,672 + Psyr_1545 0.78 +0.7 1,739,673 - Psyr_1545 0.78 -1.3 1,740,002 + -0.4 1,740,002 + -2.3 1,740,003 - +0.6 1,740,005 + -0.4 1,740,005 + +0.6 1,740,005 + +0.6 1,740,005 + -0.1 1,740,005 + -0.5 1,740,005 + +2.6 1,740,005 + +1.9 1,740,006 - -0.8 1,740,006 - +1.3 1,740,006 - +1.9 1,740,006 - +0.2 1,740,006 - -1.1 1,740,006 - -0.1 1,740,006 - -1.4 1,740,006 - +0.8 1,740,102 + Psyr_1546 0.27 +0.3 1,740,102 + Psyr_1546 0.27 +1.2 1,740,102 + Psyr_1546 0.27 +0.0 1,740,103 - Psyr_1546 0.28 +0.8 1,740,103 - Psyr_1546 0.28 +0.5 1,740,103 - Psyr_1546 0.28 -0.8 1,740,103 - Psyr_1546 0.28 -0.5 1,740,114 + Psyr_1546 0.30 +1.6 1,740,343 - Psyr_1546 0.78 -0.5 1,740,343 - Psyr_1546 0.78 +0.8 1,740,431 + +0.6 1,740,431 + +0.8 1,740,431 + -0.1 1,740,431 + +0.8 1,740,431 + +0.3 1,740,431 + +1.1 1,740,431 + +0.1 1,740,431 + -0.6 1,740,432 - +3.1 1,740,432 - +1.3 1,740,432 - +0.2 1,740,432 - -0.8 1,740,432 - +1.9 1,740,432 - +0.6 1,740,432 - -1.3 1,740,432 - +0.1 1,740,432 - -0.1 1,740,432 - -2.3 1,740,432 - -0.3 1,740,456 + -0.5 1,740,456 + +1.4 1,740,456 + -1.6 1,740,456 + +0.2 1,740,456 + -0.1 1,740,456 + -0.4 1,740,457 - +0.6 1,740,457 - -0.8 1,740,457 - +1.2 1,740,457 - +0.2 1,740,457 - +0.9 1,740,457 - +0.3 1,740,457 - -1.3 1,740,457 - +1.6 1,740,457 - +1.0 1,740,618 + Psyr_1547 0.29 +0.3 1,740,618 + Psyr_1547 0.29 -1.6 1,740,618 + Psyr_1547 0.29 -0.2 1,740,618 + Psyr_1547 0.29 -0.8 1,740,618 + Psyr_1547 0.29 -0.6 1,740,618 + Psyr_1547 0.29 +0.6 1,740,618 + Psyr_1547 0.29 -0.4 1,740,619 - Psyr_1547 0.29 -1.9 1,740,714 + Psyr_1547 0.46 +0.6 1,740,715 - Psyr_1547 0.46 -0.4 1,740,723 + Psyr_1547 0.48 +0.1 1,740,724 - Psyr_1547 0.48 -1.0 1,741,029 + -0.3 1,741,095 + -2.0 1,741,095 + -0.4 1,741,096 - -0.8 1,741,096 - +1.4 1,741,096 - -0.2 1,741,096 - +1.7 1,741,133 + -2.6 1,741,133 + -1.4 1,741,133 + -0.6 1,741,133 + -0.4 1,741,133 + +1.1 1,741,133 + -0.7 1,741,133 + -0.7 1,741,133 + -1.7 1,741,133 + -0.3 1,741,134 - -0.4 1,741,134 - -0.5 1,741,134 - -0.1 1,741,134 - +1.4 1,741,134 - +0.9 1,741,134 - -0.4 1,741,134 - +0.3 1,741,134 - +0.6 1,741,134 - -0.3 1,741,134 - +0.6 1,741,134 - +0.6 1,741,134 - +1.8 1,741,134 - +1.3 1,741,286 + -0.7 1,741,286 + -2.0 1,741,286 + +0.1 1,741,286 + -0.7 1,741,306 + +0.9
Or see this region's nucleotide sequence