Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0821 and Psyr_0822 overlap by 1 nucleotides Psyr_0822 and Psyr_0823 are separated by 12 nucleotides
Psyr_0821: Psyr_0821 - PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase, at 926,782 to 929,652
_0821
Psyr_0822: Psyr_0822 - 1-phosphofructokinase, at 929,652 to 930,593
_0822
Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348
_0823
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 928.682 kb on + strand, within Psyr_0821 at 928.683 kb on - strand, within Psyr_0821 at 928.683 kb on - strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.650 kb on + strand at 929.650 kb on + strand at 929.651 kb on - strand at 929.782 kb on + strand, within Psyr_0822 at 929.783 kb on - strand, within Psyr_0822 at 930.524 kb on + strand at 930.571 kb on + strand at 930.572 kb on - strand at 930.591 kb on + strand at 930.591 kb on + strand at 930.592 kb on - strand at 930.592 kb on - strand at 930.592 kb on - strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.655 kb on + strand at 931.003 kb on + strand, within Psyr_0823 at 931.003 kb on + strand, within Psyr_0823 at 931.004 kb on - strand, within Psyr_0823 at 931.059 kb on + strand, within Psyr_0823 at 931.059 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.198 kb on - strand, within Psyr_0823 at 931.198 kb on - strand, within Psyr_0823 at 931.326 kb on + strand, within Psyr_0823 at 931.327 kb on - strand, within Psyr_0823 at 931.577 kb on + strand, within Psyr_0823
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 928,682 + Psyr_0821 0.66 +2.8 928,683 - Psyr_0821 0.66 -0.1 928,683 - Psyr_0821 0.66 -0.2 929,320 + Psyr_0821 0.88 +0.2 929,320 + Psyr_0821 0.88 -1.0 929,320 + Psyr_0821 0.88 -0.1 929,320 + Psyr_0821 0.88 -0.1 929,321 - Psyr_0821 0.88 +0.1 929,321 - Psyr_0821 0.88 -0.3 929,321 - Psyr_0821 0.88 -0.3 929,321 - Psyr_0821 0.88 -0.2 929,321 - Psyr_0821 0.88 -0.9 929,321 - Psyr_0821 0.88 +0.2 929,321 - Psyr_0821 0.88 +0.0 929,321 - Psyr_0821 0.88 -0.7 929,650 + +0.1 929,650 + +0.5 929,651 - -0.5 929,782 + Psyr_0822 0.14 -1.2 929,783 - Psyr_0822 0.14 +2.5 930,524 + +3.3 930,571 + -0.0 930,572 - +0.5 930,591 + +0.3 930,591 + -0.2 930,592 - +1.1 930,592 - +0.4 930,592 - -0.4 930,619 + -1.8 930,619 + +0.2 930,619 + +0.5 930,619 + +1.0 930,619 + +1.3 930,619 + -0.8 930,619 + -0.3 930,620 - +0.0 930,620 - +1.1 930,620 - +0.6 930,620 - +0.6 930,655 + +0.4 931,003 + Psyr_0823 0.23 +0.5 931,003 + Psyr_0823 0.23 +0.5 931,004 - Psyr_0823 0.23 +0.4 931,059 + Psyr_0823 0.26 -0.8 931,059 + Psyr_0823 0.26 +0.8 931,197 + Psyr_0823 0.34 -1.3 931,198 - Psyr_0823 0.34 -2.3 931,198 - Psyr_0823 0.34 -2.1 931,326 + Psyr_0823 0.41 -0.3 931,327 - Psyr_0823 0.41 -0.5 931,577 + Psyr_0823 0.56 +0.4
Or see this region's nucleotide sequence