Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0816 and Psyr_0817 are separated by 203 nucleotides Psyr_0817 and Psyr_0818 are separated by 15 nucleotides Psyr_0818 and Psyr_0819 are separated by 35 nucleotides
Psyr_0816: Psyr_0816 - conserved hypothetical protein, at 920,739 to 922,994
_0816
Psyr_0817: Psyr_0817 - N-acetylmuramoyl-L-alanine amidase, family 2, at 923,198 to 923,746
_0817
Psyr_0818: Psyr_0818 - ampE protein, at 923,762 to 924,598
_0818
Psyr_0819: Psyr_0819 - TatD-related deoxyribonuclease, at 924,634 to 925,428
_0819
Position (kb) 923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.211 kb on - strand, within Psyr_0816 at 922.702 kb on + strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.796 kb on + strand at 922.796 kb on + strand at 922.796 kb on + strand at 922.797 kb on - strand at 922.797 kb on - strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.831 kb on - strand at 922.913 kb on - strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 923.031 kb on + strand at 923.031 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.109 kb on - strand at 923.159 kb on - strand at 923.168 kb on + strand at 923.169 kb on - strand at 923.172 kb on + strand at 923.172 kb on + strand at 923.173 kb on - strand at 923.173 kb on - strand at 923.388 kb on - strand, within Psyr_0817 at 923.588 kb on + strand, within Psyr_0817 at 923.589 kb on - strand, within Psyr_0817 at 923.653 kb on + strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.779 kb on - strand at 923.976 kb on - strand, within Psyr_0818 at 924.018 kb on - strand, within Psyr_0818 at 924.171 kb on - strand, within Psyr_0818 at 924.218 kb on + strand, within Psyr_0818 at 924.219 kb on - strand, within Psyr_0818 at 924.226 kb on - strand, within Psyr_0818 at 924.226 kb on - strand, within Psyr_0818 at 924.543 kb on + strand at 924.543 kb on + strand at 924.544 kb on - strand at 924.544 kb on - strand at 924.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 922,210 + Psyr_0816 0.65 +1.2 922,210 + Psyr_0816 0.65 +0.5 922,210 + Psyr_0816 0.65 +1.5 922,211 - Psyr_0816 0.65 +0.8 922,702 + Psyr_0816 0.87 -0.1 922,703 - Psyr_0816 0.87 +0.8 922,703 - Psyr_0816 0.87 -0.9 922,796 + -0.4 922,796 + -0.3 922,796 + -1.3 922,797 - -0.5 922,797 - +0.4 922,830 + +0.9 922,830 + +0.3 922,830 + -1.0 922,830 + +0.7 922,831 - +0.9 922,913 - -1.6 922,916 + +0.2 922,916 + +1.3 922,916 + -1.4 922,916 + +0.4 922,916 + +0.9 922,916 + -0.8 922,916 + -0.1 922,917 - -0.7 922,917 - -0.9 922,917 - -1.9 922,917 - -0.1 923,031 + -0.1 923,031 + -0.4 923,094 + -0.6 923,094 + +0.3 923,094 + +0.1 923,094 + -1.3 923,094 + -0.6 923,094 + -0.9 923,108 + -0.5 923,108 + -1.0 923,108 + -0.7 923,108 + +0.0 923,108 + +1.7 923,108 + -0.5 923,108 + +0.5 923,109 - -0.6 923,159 - +0.5 923,168 + -0.1 923,169 - +2.1 923,172 + +0.6 923,172 + +0.7 923,173 - +1.1 923,173 - +0.6 923,388 - Psyr_0817 0.35 -2.0 923,588 + Psyr_0817 0.71 +0.1 923,589 - Psyr_0817 0.71 -0.6 923,653 + Psyr_0817 0.83 -0.7 923,654 - Psyr_0817 0.83 -2.0 923,654 - Psyr_0817 0.83 -1.4 923,654 - Psyr_0817 0.83 -0.5 923,654 - Psyr_0817 0.83 +0.4 923,779 - +0.4 923,976 - Psyr_0818 0.26 -0.2 924,018 - Psyr_0818 0.31 +0.3 924,171 - Psyr_0818 0.49 -0.0 924,218 + Psyr_0818 0.54 +0.4 924,219 - Psyr_0818 0.55 -0.4 924,226 - Psyr_0818 0.55 -0.2 924,226 - Psyr_0818 0.55 +0.2 924,543 + +2.2 924,543 + +0.1 924,544 - -0.2 924,544 - -0.4 924,544 - -0.4
Or see this region's nucleotide sequence