Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0514 and Psyr_0515 are separated by 137 nucleotides Psyr_0515 and Psyr_0516 are separated by 175 nucleotides
Psyr_0514: Psyr_0514 - Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK, at 569,076 to 571,274
_0514
Psyr_0515: Psyr_0515 - HI0933-like protein, at 571,412 to 572,590
_0515
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.479 kb on - strand, within Psyr_0514 at 570.484 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.852 kb on + strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 571.211 kb on + strand at 571.211 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.323 kb on + strand at 571.323 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.370 kb on + strand at 571.398 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.434 kb on + strand at 571.434 kb on + strand at 571.435 kb on - strand at 571.671 kb on + strand, within Psyr_0515 at 571.671 kb on + strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.644 kb on + strand at 572.644 kb on + strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.717 kb on + strand at 572.717 kb on + strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.738 kb on + strand at 572.768 kb on - strand at 572.861 kb on - strand at 573.269 kb on + strand, within Psyr_0516 at 573.270 kb on - strand, within Psyr_0516 at 573.295 kb on - strand, within Psyr_0516 at 573.438 kb on + strand, within Psyr_0516 at 573.439 kb on - strand, within Psyr_0516
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 570,478 + Psyr_0514 0.64 +1.1 570,478 + Psyr_0514 0.64 +0.4 570,478 + Psyr_0514 0.64 -0.2 570,479 - Psyr_0514 0.64 +0.8 570,484 + Psyr_0514 0.64 -0.5 570,529 + Psyr_0514 0.66 +0.4 570,529 + Psyr_0514 0.66 -0.4 570,529 + Psyr_0514 0.66 +1.3 570,529 + Psyr_0514 0.66 +1.0 570,530 - Psyr_0514 0.66 -0.8 570,530 - Psyr_0514 0.66 -0.2 570,852 + Psyr_0514 0.81 +0.1 570,853 - Psyr_0514 0.81 -0.1 570,853 - Psyr_0514 0.81 +0.1 570,853 - Psyr_0514 0.81 -0.4 570,853 - Psyr_0514 0.81 +0.6 570,889 + Psyr_0514 0.82 +0.2 570,889 + Psyr_0514 0.82 -1.7 570,928 + Psyr_0514 0.84 -0.1 570,928 + Psyr_0514 0.84 +1.2 571,211 + +0.1 571,211 + +2.4 571,213 + -0.0 571,213 + -0.0 571,213 + +0.6 571,213 + -0.4 571,214 - +0.2 571,214 - -2.2 571,214 - -0.6 571,214 - +0.6 571,250 + +0.1 571,250 + +0.7 571,250 + +0.3 571,250 + -0.2 571,250 + -2.1 571,251 - +0.6 571,251 - -0.1 571,251 - +0.7 571,251 - +0.1 571,251 - +0.8 571,251 - -1.9 571,323 + +0.4 571,323 - +0.2 571,324 - +0.4 571,324 - +0.2 571,324 - -0.4 571,324 - -1.2 571,327 + +0.4 571,327 + -1.8 571,327 + +0.8 571,327 + +0.5 571,327 + +0.8 571,327 + +1.0 571,327 + +0.1 571,327 + +0.8 571,327 + +0.3 571,327 + -0.0 571,328 - +1.1 571,328 - -1.0 571,328 - -0.3 571,328 - -0.1 571,328 - +0.5 571,328 - +0.5 571,328 - -0.6 571,328 - +1.1 571,328 - -1.0 571,328 - -0.2 571,328 - -0.8 571,328 - +1.0 571,328 - +2.2 571,328 - -0.1 571,348 + +1.2 571,348 + +0.5 571,348 + +0.3 571,348 + +0.3 571,349 - +0.3 571,349 - +0.3 571,349 - +1.0 571,349 - +0.8 571,349 - +2.8 571,349 - +0.3 571,349 - +0.3 571,370 + -0.3 571,398 + -0.5 571,419 + -2.0 571,419 + +0.6 571,419 + -0.0 571,419 + -0.1 571,419 + +1.4 571,419 + +1.4 571,419 + +0.0 571,419 + +0.8 571,419 + +0.9 571,419 + +2.4 571,420 - -2.6 571,420 - +0.8 571,420 - -0.5 571,420 - +0.1 571,420 - -2.0 571,434 + -1.3 571,434 + +0.4 571,435 - +0.5 571,671 + Psyr_0515 0.22 -0.4 571,671 + Psyr_0515 0.22 +0.8 571,672 - Psyr_0515 0.22 +0.7 571,672 - Psyr_0515 0.22 -1.2 571,672 - Psyr_0515 0.22 -0.5 572,424 + Psyr_0515 0.86 +0.2 572,424 + Psyr_0515 0.86 -1.9 572,424 + Psyr_0515 0.86 -1.1 572,424 + Psyr_0515 0.86 -0.1 572,424 + Psyr_0515 0.86 +0.3 572,424 + Psyr_0515 0.86 +0.9 572,424 + Psyr_0515 0.86 -0.2 572,424 + Psyr_0515 0.86 +0.0 572,425 - Psyr_0515 0.86 +0.6 572,425 - Psyr_0515 0.86 -1.0 572,428 + Psyr_0515 0.86 -0.2 572,428 + Psyr_0515 0.86 -0.9 572,428 + Psyr_0515 0.86 -0.5 572,428 + Psyr_0515 0.86 +0.9 572,428 + Psyr_0515 0.86 -0.5 572,428 + Psyr_0515 0.86 -0.5 572,429 - Psyr_0515 0.86 -1.0 572,429 - Psyr_0515 0.86 +0.0 572,429 - Psyr_0515 0.86 -0.4 572,429 - Psyr_0515 0.86 -2.4 572,429 - Psyr_0515 0.86 +0.3 572,429 - Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 +0.1 572,429 - Psyr_0515 0.86 -0.9 572,429 - Psyr_0515 0.86 -0.1 572,570 + -0.4 572,570 + +0.0 572,570 + -0.1 572,571 - -1.2 572,571 - +0.5 572,571 - +2.8 572,644 + -0.4 572,644 + -0.3 572,645 - -0.3 572,645 - +0.1 572,645 - -0.9 572,645 - -0.2 572,715 + +0.3 572,715 + +0.6 572,715 + -0.6 572,715 + -1.5 572,715 + -1.4 572,715 + -0.2 572,715 + +1.0 572,715 + +0.7 572,715 + -0.6 572,715 + +0.0 572,715 + -0.4 572,716 - +0.1 572,716 - +0.4 572,716 - +0.1 572,716 - +0.5 572,716 - -0.5 572,716 - +0.1 572,716 - +1.9 572,716 - -3.4 572,716 - +2.0 572,716 - -0.9 572,716 - -0.1 572,716 - +0.2 572,716 - -0.8 572,716 - +0.2 572,716 - +1.2 572,716 - -1.3 572,716 - +0.8 572,716 - -0.8 572,716 - -1.3 572,717 + +0.0 572,717 + -0.5 572,718 - -0.5 572,718 - -0.2 572,718 - -0.2 572,718 - -0.4 572,718 - +0.5 572,718 - +0.1 572,718 - +0.8 572,738 + +0.3 572,768 - +1.1 572,861 - -0.5 573,269 + Psyr_0516 0.35 +0.5 573,270 - Psyr_0516 0.35 -1.4 573,295 - Psyr_0516 0.37 -0.2 573,438 + Psyr_0516 0.47 +0.1 573,439 - Psyr_0516 0.47 -0.6
Or see this region's nucleotide sequence