Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0060

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
58,601	+		Psyr_0059	0.25	+1.1
58,625	+		Psyr_0059	0.27	+0.6
58,625	+		Psyr_0059	0.27	-1.9
58,625	+		Psyr_0059	0.27	+0.5
58,625	+		Psyr_0059	0.27	+0.2
58,625	+		Psyr_0059	0.27	+0.5
58,700	+		Psyr_0059	0.33	-0.2
58,938	-		Psyr_0059	0.52	-0.6
58,938	-		Psyr_0059	0.52	-0.6
59,165	+		Psyr_0059	0.71	+0.4
59,165	+		Psyr_0059	0.71	+1.0
59,165	+		Psyr_0059	0.71	+1.4
59,165	+		Psyr_0059	0.71	+2.7
59,165	+		Psyr_0059	0.71	-1.0
59,166	-		Psyr_0059	0.71	-0.8
59,166	-		Psyr_0059	0.71	-0.1
59,166	-		Psyr_0059	0.71	+1.8
59,166	-		Psyr_0059	0.71	-0.1
59,166	-		Psyr_0059	0.71	+0.3
59,166	-		Psyr_0059	0.71	-0.7
59,169	-		Psyr_0059	0.71	+0.0
59,169	-		Psyr_0059	0.71	+0.3
59,169	-		Psyr_0059	0.71	+0.3
59,269	+		Psyr_0059	0.79	+1.1
59,269	+		Psyr_0059	0.79	-1.1
59,269	+		Psyr_0059	0.79	+0.8
59,269	+		Psyr_0059	0.79	-0.9
59,269	+		Psyr_0059	0.79	-2.0
59,269	+		Psyr_0059	0.79	+2.0
59,269	+		Psyr_0059	0.79	+1.7
59,269	+		Psyr_0059	0.79	+1.6
59,270	-		Psyr_0059	0.79	-0.1
59,270	-		Psyr_0059	0.79	+2.1
59,270	-		Psyr_0059	0.79	-0.1
59,270	-		Psyr_0059	0.79	+0.9
59,270	-		Psyr_0059	0.79	+0.3
59,270	-		Psyr_0059	0.79	+0.3
59,270	-		Psyr_0059	0.79	+1.1
59,270	-		Psyr_0059	0.79	+0.6
59,270	-		Psyr_0059	0.79	-0.6
59,270	-		Psyr_0059	0.79	-2.6
59,270	-		Psyr_0059	0.79	+0.0
59,448	-				-0.5
59,506	+				-0.5
59,506	+				+0.4
59,516	+				-1.2
59,516	+				-0.1
59,516	+				-1.6
59,516	+				+1.4
59,516	+				+1.8
59,516	+				+0.3
59,516	+				-1.2
59,516	+				+0.6
59,516	+				-0.6
59,516	+				-0.1
59,516	+				+0.1
59,516	+				-0.4
59,516	+				+0.1
59,516	+				-1.2
59,516	+				+0.1
59,517	-				-1.2
59,517	-				-0.7
59,517	-				-0.3
59,517	-				-2.2
59,517	-				-0.5
59,517	-				-1.8
59,517	-				+0.5
59,517	-				+1.1
59,517	-				+1.7
59,517	-				-0.2
59,517	-				+0.6
59,517	-				+0.6
59,517	-				-0.4
59,517	-				-0.7
59,587	+				-0.8
59,588	-				-0.1
59,887	+		Psyr_0060	0.31	-0.3
59,888	-		Psyr_0060	0.31	-0.8
59,888	-		Psyr_0060	0.31	-0.8
59,888	-		Psyr_0060	0.31	-1.0
60,003	+		Psyr_0060	0.41	-1.2
60,003	+		Psyr_0060	0.41	-1.5
60,003	+		Psyr_0060	0.41	-1.5
60,003	+		Psyr_0060	0.41	-1.7
60,004	-		Psyr_0060	0.41	+2.1
60,004	-		Psyr_0060	0.41	-1.1
60,004	-		Psyr_0060	0.41	+0.1
60,372	-		Psyr_0060	0.72	-0.1
60,372	-		Psyr_0060	0.72	-1.1
60,627	-				-1.0
60,650	-				+0.5
60,650	-				+0.3
60,673	+				+0.9
60,677	-				+0.5
60,677	-				-0.3
60,682	-				+0.7
60,682	-				-0.5
60,702	+				-1.7
61,494	-				-0.3
61,494	-				+0.8