Experiment: H2 McCas deepwell complete
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07655 and MMP_RS07660 are separated by 91 nucleotides MMP_RS07660 and MMP_RS07665 are separated by 2 nucleotides
MMP_RS07655: MMP_RS07655 - bifunctional NADP phosphatase/NAD kinase, at 1,449,326 to 1,451,026
_RS07655
MMP_RS07660: MMP_RS07660 - L-seryl-tRNA(Sec) kinase, at 1,451,118 to 1,451,885
_RS07660
MMP_RS07665: MMP_RS07665 - amidohydrolase, at 1,451,888 to 1,453,156
_RS07665
Position (kb)
1451
1452 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1450.319 kb on - strand at 1450.372 kb on - strand at 1450.402 kb on + strand at 1451.041 kb on - strand at 1451.042 kb on + strand at 1451.045 kb on - strand at 1451.045 kb on - strand at 1451.045 kb on - strand at 1451.045 kb on - strand at 1451.046 kb on + strand at 1451.046 kb on + strand at 1451.046 kb on + strand at 1451.046 kb on + strand at 1451.049 kb on - strand at 1451.049 kb on - strand at 1451.052 kb on - strand at 1451.052 kb on - strand at 1451.056 kb on - strand at 1451.057 kb on + strand at 1451.333 kb on - strand at 1451.444 kb on + strand at 1451.505 kb on - strand at 1451.690 kb on - strand at 1451.866 kb on - strand at 1451.908 kb on + strand at 1451.999 kb on + strand at 1452.026 kb on - strand at 1452.198 kb on + strand at 1452.443 kb on + strand at 1452.445 kb on - strand at 1452.565 kb on + strand at 1452.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas deepwell complete remove 1,450,319 - -3.1 1,450,372 - -2.8 1,450,402 + -1.9 1,451,041 - -3.5 1,451,042 + -2.3 1,451,045 - +2.2 1,451,045 - +2.0 1,451,045 - +2.2 1,451,045 - +1.8 1,451,046 + -0.3 1,451,046 + -1.0 1,451,046 + -0.1 1,451,046 + +0.5 1,451,049 - +1.2 1,451,049 - +0.9 1,451,052 - +1.5 1,451,052 - +1.8 1,451,056 - +2.7 1,451,057 + -1.5 1,451,333 - -2.4 1,451,444 + -2.5 1,451,505 - -1.6 1,451,690 - -3.4 1,451,866 - -0.8 1,451,908 + -0.4 1,451,999 + -2.9 1,452,026 - -2.9 1,452,198 + -3.6 1,452,443 + -4.2 1,452,445 - -0.6 1,452,565 + -1.2 1,452,817 - -2.5
Or see this region's nucleotide sequence