Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0629

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0627 and Ga0059261_0628 overlap by 4 nucleotidesGa0059261_0628 and Ga0059261_0629 overlap by 47 nucleotidesGa0059261_0629 and Ga0059261_0630 overlap by 13 nucleotides Ga0059261_0627: Ga0059261_0627 - cobalamin-5'-phosphate synthase (EC 2.7.8.26), at 666,727 to 667,443 _0627 Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399 _0628 Ga0059261_0629: Ga0059261_0629 - cobalamin biosynthesis protein CobD, at 668,353 to 669,324 _0629 Ga0059261_0630: Ga0059261_0630 - adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10), at 669,312 to 670,775 _0630 Position (kb) 668 669 670Strain fitness (log2 ratio) -2 -1 0 1at 667.635 kb on + strand, within Ga0059261_0628at 667.636 kb on - strandat 667.728 kb on + strand, within Ga0059261_0628at 667.743 kb on + strand, within Ga0059261_0628at 667.744 kb on - strand, within Ga0059261_0628at 668.121 kb on + strand, within Ga0059261_0628at 668.121 kb on + strand, within Ga0059261_0628at 668.121 kb on + strand, within Ga0059261_0628at 668.121 kb on + strand, within Ga0059261_0628at 668.121 kb on + strand, within Ga0059261_0628at 668.122 kb on - strand, within Ga0059261_0628at 668.122 kb on - strand, within Ga0059261_0628at 668.317 kb on - strandat 668.317 kb on - strandat 668.458 kb on + strand, within Ga0059261_0629at 668.458 kb on + strand, within Ga0059261_0629at 668.458 kb on + strand, within Ga0059261_0629at 668.459 kb on - strandat 668.459 kb on - strand, within Ga0059261_0629at 668.816 kb on + strand, within Ga0059261_0629at 668.816 kb on + strand, within Ga0059261_0629at 668.889 kb on - strand, within Ga0059261_0629at 668.908 kb on - strand, within Ga0059261_0629at 668.908 kb on - strand, within Ga0059261_0629at 668.917 kb on + strand, within Ga0059261_0629at 668.917 kb on + strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 668.918 kb on - strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strand, within Ga0059261_0629at 669.178 kb on + strandat 669.179 kb on - strand, within Ga0059261_0629at 669.179 kb on - strand, within Ga0059261_0629at 669.179 kb on - strand, within Ga0059261_0629at 669.265 kb on + strandat 669.265 kb on + strandat 669.265 kb on + strandat 669.265 kb on + strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.266 kb on - strandat 669.521 kb on + strand, within Ga0059261_0630at 669.522 kb on - strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.755 kb on + strand, within Ga0059261_0630at 669.756 kb on - strand, within Ga0059261_0630at 670.102 kb on + strand, within Ga0059261_0630at 670.147 kb on + strand, within Ga0059261_0630at 670.147 kb on + strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.148 kb on - strand, within Ga0059261_0630at 670.256 kb on + strand, within Ga0059261_0630at 670.315 kb on - strand, within Ga0059261_0630

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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667,635 + Ga0059261_0628 0.20 +0.3
667,636 - +0.9
667,728 + Ga0059261_0628 0.30 -0.8
667,743 + Ga0059261_0628 0.32 +0.0
667,744 - Ga0059261_0628 0.32 -0.8
668,121 + Ga0059261_0628 0.71 -0.3
668,121 + Ga0059261_0628 0.71 -0.9
668,121 + Ga0059261_0628 0.71 -2.3
668,121 + Ga0059261_0628 0.71 +0.7
668,121 + Ga0059261_0628 0.71 -0.7
668,122 - Ga0059261_0628 0.71 -0.9
668,122 - Ga0059261_0628 0.71 -0.5
668,317 - +0.1
668,317 - +0.2
668,458 + Ga0059261_0629 0.11 -0.3
668,458 + Ga0059261_0629 0.11 +1.6
668,458 + Ga0059261_0629 0.11 -0.4
668,459 - +0.9
668,459 - Ga0059261_0629 0.11 +0.6
668,816 + Ga0059261_0629 0.48 +0.3
668,816 + Ga0059261_0629 0.48 +0.3
668,889 - Ga0059261_0629 0.55 -0.8
668,908 - Ga0059261_0629 0.57 +0.0
668,908 - Ga0059261_0629 0.57 -0.1
668,917 + Ga0059261_0629 0.58 +1.2
668,917 + Ga0059261_0629 0.58 -1.4
668,918 - Ga0059261_0629 0.58 -0.0
668,918 - Ga0059261_0629 0.58 -0.2
668,918 - Ga0059261_0629 0.58 +0.5
668,918 - Ga0059261_0629 0.58 +1.0
668,918 - Ga0059261_0629 0.58 +1.5
669,178 + Ga0059261_0629 0.85 +0.7
669,178 + Ga0059261_0629 0.85 +0.9
669,178 + Ga0059261_0629 0.85 -0.9
669,178 + +0.9
669,179 - Ga0059261_0629 0.85 -0.4
669,179 - Ga0059261_0629 0.85 -0.2
669,179 - Ga0059261_0629 0.85 +0.3
669,265 + +0.2
669,265 + +0.1
669,265 + -0.2
669,265 + +0.3
669,266 - +0.1
669,266 - +0.6
669,266 - -0.0
669,266 - +0.3
669,266 - -1.6
669,521 + Ga0059261_0630 0.14 -0.6
669,522 - Ga0059261_0630 0.14 -0.3
669,755 + Ga0059261_0630 0.30 +1.2
669,755 + Ga0059261_0630 0.30 -0.6
669,755 + Ga0059261_0630 0.30 -1.1
669,755 + Ga0059261_0630 0.30 +0.0
669,756 - Ga0059261_0630 0.30 -0.2
670,102 + Ga0059261_0630 0.54 +0.1
670,147 + Ga0059261_0630 0.57 -0.9
670,147 + Ga0059261_0630 0.57 -0.9
670,148 - Ga0059261_0630 0.57 -1.4
670,148 - Ga0059261_0630 0.57 +0.3
670,148 - Ga0059261_0630 0.57 +0.7
670,148 - Ga0059261_0630 0.57 +0.0
670,256 + Ga0059261_0630 0.64 -0.1
670,315 - Ga0059261_0630 0.69 -0.6

Or see this region's nucleotide sequence