Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0129

Experiment: Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0127 and Ga0059261_0128 overlap by 4 nucleotidesGa0059261_0128 and Ga0059261_0129 are separated by 22 nucleotidesGa0059261_0129 and Ga0059261_0130 are separated by 67 nucleotidesGa0059261_0130 and Ga0059261_0131 overlap by 4 nucleotidesGa0059261_0131 and Ga0059261_0132 are separated by 79 nucleotides Ga0059261_0127: Ga0059261_0127 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 121,236 to 122,000 _0127 Ga0059261_0128: Ga0059261_0128 - clan AA aspartic protease, TIGR02281 family, at 121,997 to 122,617 _0128 Ga0059261_0129: Ga0059261_0129 - MazG family protein, at 122,640 to 123,431 _0129 Ga0059261_0130: Ga0059261_0130 - Predicted lactoylglutathione lyase, at 123,499 to 123,888 _0130 Ga0059261_0131: Ga0059261_0131 - hypothetical protein, at 123,885 to 124,232 _0131 Ga0059261_0132: Ga0059261_0132 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 124,312 to 124,962 _0132 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1 2 3at 121.764 kb on - strand, within Ga0059261_0127at 121.911 kb on - strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.920 kb on - strandat 121.920 kb on - strand, within Ga0059261_0127at 121.920 kb on - strand, within Ga0059261_0127at 121.920 kb on - strand, within Ga0059261_0127at 121.929 kb on + strandat 121.929 kb on + strandat 121.929 kb on + strandat 121.929 kb on + strandat 121.930 kb on - strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strandat 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.378 kb on + strand, within Ga0059261_0128at 122.378 kb on + strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.565 kb on + strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.620 kb on + strandat 122.621 kb on - strandat 122.623 kb on - strandat 122.623 kb on - strandat 122.759 kb on + strand, within Ga0059261_0129at 122.759 kb on + strand, within Ga0059261_0129at 122.759 kb on + strand, within Ga0059261_0129at 122.760 kb on - strand, within Ga0059261_0129at 122.791 kb on - strand, within Ga0059261_0129at 122.808 kb on + strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.982 kb on - strand, within Ga0059261_0129at 122.982 kb on - strandat 123.429 kb on + strandat 123.429 kb on + strandat 123.430 kb on - strandat 123.430 kb on - strandat 123.467 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.616 kb on + strand, within Ga0059261_0130at 123.617 kb on - strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strandat 123.824 kb on - strandat 123.824 kb on - strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strandat 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.886 kb on + strandat 123.887 kb on - strandat 123.887 kb on - strandat 123.887 kb on - strandat 123.912 kb on + strandat 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 124.081 kb on + strand, within Ga0059261_0131at 124.102 kb on + strand, within Ga0059261_0131at 124.102 kb on + strand, within Ga0059261_0131at 124.103 kb on - strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.141 kb on + strand, within Ga0059261_0131at 124.142 kb on - strand, within Ga0059261_0131at 124.238 kb on + strandat 124.238 kb on + strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.250 kb on + strandat 124.313 kb on + strandat 124.313 kb on + strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strandat 124.404 kb on + strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
remove
121,764 - Ga0059261_0127 0.69 +0.2
121,911 - Ga0059261_0127 0.88 -1.0
121,919 + Ga0059261_0127 0.89 -0.5
121,919 + Ga0059261_0127 0.89 -0.5
121,919 + Ga0059261_0127 0.89 +0.3
121,919 + Ga0059261_0127 0.89 +0.1
121,919 + Ga0059261_0127 0.89 +0.3
121,919 + Ga0059261_0127 0.89 -0.7
121,919 + Ga0059261_0127 0.89 -0.5
121,920 - +0.5
121,920 - Ga0059261_0127 0.89 +0.2
121,920 - Ga0059261_0127 0.89 -2.0
121,920 - Ga0059261_0127 0.89 +0.3
121,929 + -0.1
121,929 + -0.3
121,929 + +0.2
121,929 + -0.1
121,930 - -0.4
121,931 + -0.6
121,931 + -0.0
121,931 + -0.4
121,931 + +0.3
121,931 + +0.9
121,931 + -0.1
121,931 + +1.0
121,931 + +0.3
121,932 - +0.2
121,932 - -0.3
121,932 - -0.1
121,932 - -0.1
121,932 - +0.4
122,138 + Ga0059261_0128 0.23 -0.6
122,138 + Ga0059261_0128 0.23 +0.5
122,138 + Ga0059261_0128 0.23 -0.2
122,138 + Ga0059261_0128 0.23 +0.1
122,138 + Ga0059261_0128 0.23 +0.4
122,138 + Ga0059261_0128 0.23 +0.9
122,139 - Ga0059261_0128 0.23 -0.3
122,139 - Ga0059261_0128 0.23 -0.1
122,139 - +0.3
122,139 - Ga0059261_0128 0.23 +1.9
122,139 - Ga0059261_0128 0.23 +0.2
122,139 - Ga0059261_0128 0.23 +0.9
122,139 - Ga0059261_0128 0.23 -1.3
122,139 - Ga0059261_0128 0.23 -0.4
122,139 - Ga0059261_0128 0.23 +0.1
122,139 - Ga0059261_0128 0.23 +0.1
122,378 + Ga0059261_0128 0.61 +1.2
122,378 + Ga0059261_0128 0.61 -0.4
122,379 - Ga0059261_0128 0.62 +0.5
122,379 - Ga0059261_0128 0.62 -0.0
122,379 - Ga0059261_0128 0.62 +1.0
122,379 - Ga0059261_0128 0.62 +0.9
122,565 + +0.4
122,616 - -0.6
122,616 - -0.1
122,620 + -0.1
122,621 - +0.2
122,623 - -0.1
122,623 - -0.5
122,759 + Ga0059261_0129 0.15 +0.3
122,759 + Ga0059261_0129 0.15 +0.2
122,759 + Ga0059261_0129 0.15 +0.9
122,760 - Ga0059261_0129 0.15 -0.6
122,791 - Ga0059261_0129 0.19 +0.3
122,808 + Ga0059261_0129 0.21 +0.2
122,809 - Ga0059261_0129 0.21 -1.0
122,809 - Ga0059261_0129 0.21 +0.2
122,809 - Ga0059261_0129 0.21 +0.6
122,809 - Ga0059261_0129 0.21 +0.5
122,809 - Ga0059261_0129 0.21 -0.5
122,809 - Ga0059261_0129 0.21 +0.2
122,809 - Ga0059261_0129 0.21 +0.5
122,809 - Ga0059261_0129 0.21 +0.3
122,981 + Ga0059261_0129 0.43 +0.7
122,981 + Ga0059261_0129 0.43 +0.4
122,981 + Ga0059261_0129 0.43 -0.2
122,981 + Ga0059261_0129 0.43 +0.6
122,981 + Ga0059261_0129 0.43 +0.7
122,981 + Ga0059261_0129 0.43 -0.4
122,982 - Ga0059261_0129 0.43 -2.0
122,982 - -1.1
123,429 + +0.9
123,429 + +0.4
123,430 - -0.3
123,430 - +0.4
123,467 + -0.1
123,508 + +0.0
123,508 + -0.5
123,508 + +0.3
123,508 + +0.9
123,508 + -0.4
123,508 + +0.4
123,508 + -1.0
123,508 + +0.2
123,508 + -0.5
123,508 + +0.1
123,508 + +0.2
123,509 - +0.6
123,509 - +0.9
123,509 - +0.3
123,553 + Ga0059261_0130 0.14 +0.2
123,553 + Ga0059261_0130 0.14 +0.2
123,553 + Ga0059261_0130 0.14 +0.6
123,554 - Ga0059261_0130 0.14 -1.5
123,554 - Ga0059261_0130 0.14 -0.2
123,554 - Ga0059261_0130 0.14 +0.3
123,554 - Ga0059261_0130 0.14 +0.4
123,616 + Ga0059261_0130 0.30 -0.1
123,617 - Ga0059261_0130 0.30 +0.5
123,808 + Ga0059261_0130 0.79 +0.5
123,808 + Ga0059261_0130 0.79 +0.2
123,808 + Ga0059261_0130 0.79 +0.1
123,808 + Ga0059261_0130 0.79 -0.7
123,808 + Ga0059261_0130 0.79 -0.2
123,808 + Ga0059261_0130 0.79 +0.2
123,808 + Ga0059261_0130 0.79 +0.7
123,809 - Ga0059261_0130 0.79 +0.1
123,809 - Ga0059261_0130 0.79 +0.6
123,809 - Ga0059261_0130 0.79 +0.1
123,823 + Ga0059261_0130 0.83 -0.0
123,823 + Ga0059261_0130 0.83 -0.7
123,823 + Ga0059261_0130 0.83 +0.7
123,823 + -0.7
123,824 - +0.9
123,824 - Ga0059261_0130 0.83 -0.2
123,832 + Ga0059261_0130 0.85 +0.1
123,832 + Ga0059261_0130 0.85 -0.2
123,832 + Ga0059261_0130 0.85 -0.6
123,832 + Ga0059261_0130 0.85 +0.3
123,832 + Ga0059261_0130 0.85 +0.5
123,832 + -1.5
123,832 + Ga0059261_0130 0.85 +0.4
123,832 + Ga0059261_0130 0.85 -0.3
123,833 - Ga0059261_0130 0.86 +0.6
123,833 - Ga0059261_0130 0.86 +0.1
123,833 - Ga0059261_0130 0.86 -0.3
123,886 + -0.8
123,887 - +0.3
123,887 - +0.9
123,887 - +0.9
123,912 + +0.9
123,934 + Ga0059261_0131 0.14 +0.6
123,934 + Ga0059261_0131 0.14 +0.3
123,934 + Ga0059261_0131 0.14 +0.3
123,934 + Ga0059261_0131 0.14 +0.9
123,935 - Ga0059261_0131 0.14 -0.1
123,935 - Ga0059261_0131 0.14 -0.7
123,935 - Ga0059261_0131 0.14 +1.6
124,081 + Ga0059261_0131 0.56 +0.3
124,102 + Ga0059261_0131 0.62 -1.1
124,102 + Ga0059261_0131 0.62 +3.6
124,103 - Ga0059261_0131 0.63 +2.0
124,109 + Ga0059261_0131 0.64 +0.3
124,109 + Ga0059261_0131 0.64 +0.5
124,109 + Ga0059261_0131 0.64 +0.7
124,141 + Ga0059261_0131 0.74 +0.2
124,142 - Ga0059261_0131 0.74 +1.3
124,238 + -0.0
124,238 + -0.4
124,239 - +0.6
124,239 - -0.1
124,239 - +0.1
124,239 - +0.1
124,239 - +1.7
124,250 + +1.0
124,313 + -0.1
124,313 + +0.6
124,314 - -0.1
124,314 - +1.9
124,314 - -0.5
124,314 - +0.2
124,404 + Ga0059261_0132 0.14 -0.6
124,404 + Ga0059261_0132 0.14 +0.3
124,404 + Ga0059261_0132 0.14 -0.2
124,404 + +0.3
124,404 + Ga0059261_0132 0.14 +1.1
124,405 - Ga0059261_0132 0.14 +0.1
124,405 - Ga0059261_0132 0.14 +1.6
124,405 - Ga0059261_0132 0.14 +0.4
124,405 - Ga0059261_0132 0.14 +0.0
124,405 - Ga0059261_0132 0.14 -0.3
124,405 - Ga0059261_0132 0.14 +0.1

Or see this region's nucleotide sequence