Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS06045 and CA265_RS06050 are separated by 118 nucleotides CA265_RS06050 and CA265_RS06055 are separated by 140 nucleotides
CA265_RS06045: CA265_RS06045 - arylsulfatase, at 1,482,580 to 1,484,235
_RS06045
CA265_RS06050: CA265_RS06050 - hypothetical protein, at 1,484,354 to 1,488,397
_RS06050
CA265_RS06055: CA265_RS06055 - neuraminidase, at 1,488,538 to 1,489,863
_RS06055
Position (kb) 1484
1485
1486
1487
1488
1489 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1483.379 kb on + strand, within CA265_RS06045 at 1483.390 kb on - strand, within CA265_RS06045 at 1483.390 kb on - strand, within CA265_RS06045 at 1483.477 kb on + strand, within CA265_RS06045 at 1483.478 kb on - strand, within CA265_RS06045 at 1483.498 kb on - strand, within CA265_RS06045 at 1483.551 kb on - strand, within CA265_RS06045 at 1483.555 kb on - strand, within CA265_RS06045 at 1483.557 kb on + strand, within CA265_RS06045 at 1483.641 kb on + strand, within CA265_RS06045 at 1483.641 kb on + strand, within CA265_RS06045 at 1483.654 kb on - strand, within CA265_RS06045 at 1483.663 kb on + strand, within CA265_RS06045 at 1483.664 kb on - strand, within CA265_RS06045 at 1483.738 kb on - strand, within CA265_RS06045 at 1483.740 kb on + strand, within CA265_RS06045 at 1483.874 kb on - strand, within CA265_RS06045 at 1483.925 kb on + strand, within CA265_RS06045 at 1483.926 kb on - strand, within CA265_RS06045 at 1483.992 kb on + strand, within CA265_RS06045 at 1484.023 kb on + strand, within CA265_RS06045 at 1484.023 kb on + strand, within CA265_RS06045 at 1484.024 kb on - strand, within CA265_RS06045 at 1484.024 kb on - strand, within CA265_RS06045 at 1484.137 kb on + strand at 1484.137 kb on + strand at 1484.188 kb on - strand at 1484.192 kb on + strand at 1484.233 kb on + strand at 1484.264 kb on + strand at 1484.308 kb on - strand at 1484.308 kb on - strand at 1484.431 kb on + strand at 1484.437 kb on + strand at 1484.451 kb on - strand at 1484.451 kb on - strand at 1484.480 kb on - strand at 1484.488 kb on - strand at 1484.498 kb on + strand at 1484.498 kb on + strand at 1484.499 kb on - strand at 1484.499 kb on - strand at 1484.561 kb on + strand at 1484.570 kb on - strand at 1484.661 kb on + strand at 1484.666 kb on - strand at 1484.687 kb on + strand at 1484.687 kb on + strand at 1484.688 kb on - strand at 1484.724 kb on - strand at 1484.752 kb on - strand at 1484.778 kb on + strand, within CA265_RS06050 at 1484.778 kb on + strand, within CA265_RS06050 at 1484.779 kb on - strand, within CA265_RS06050 at 1484.802 kb on + strand, within CA265_RS06050 at 1484.803 kb on - strand, within CA265_RS06050 at 1484.902 kb on - strand, within CA265_RS06050 at 1484.903 kb on + strand, within CA265_RS06050 at 1484.956 kb on + strand, within CA265_RS06050 at 1484.957 kb on - strand, within CA265_RS06050 at 1484.957 kb on - strand, within CA265_RS06050 at 1484.978 kb on - strand, within CA265_RS06050 at 1485.022 kb on + strand, within CA265_RS06050 at 1485.034 kb on + strand, within CA265_RS06050 at 1485.035 kb on - strand, within CA265_RS06050 at 1485.035 kb on - strand at 1485.134 kb on - strand, within CA265_RS06050 at 1485.134 kb on - strand, within CA265_RS06050 at 1485.150 kb on + strand, within CA265_RS06050 at 1485.203 kb on + strand, within CA265_RS06050 at 1485.230 kb on + strand, within CA265_RS06050 at 1485.340 kb on + strand at 1485.409 kb on + strand, within CA265_RS06050 at 1485.409 kb on + strand, within CA265_RS06050 at 1485.660 kb on - strand, within CA265_RS06050 at 1485.662 kb on - strand, within CA265_RS06050 at 1485.668 kb on + strand, within CA265_RS06050 at 1485.668 kb on + strand, within CA265_RS06050 at 1485.670 kb on + strand, within CA265_RS06050 at 1485.671 kb on - strand, within CA265_RS06050 at 1485.673 kb on + strand, within CA265_RS06050 at 1485.698 kb on - strand, within CA265_RS06050 at 1485.816 kb on + strand, within CA265_RS06050 at 1485.817 kb on - strand, within CA265_RS06050 at 1485.913 kb on + strand, within CA265_RS06050 at 1485.918 kb on - strand, within CA265_RS06050 at 1485.973 kb on - strand, within CA265_RS06050 at 1486.037 kb on + strand, within CA265_RS06050 at 1486.037 kb on + strand, within CA265_RS06050 at 1486.100 kb on - strand, within CA265_RS06050 at 1486.104 kb on + strand, within CA265_RS06050 at 1486.118 kb on + strand, within CA265_RS06050 at 1486.118 kb on + strand, within CA265_RS06050 at 1486.119 kb on - strand, within CA265_RS06050 at 1486.145 kb on - strand, within CA265_RS06050 at 1486.154 kb on - strand, within CA265_RS06050 at 1486.174 kb on + strand, within CA265_RS06050 at 1486.282 kb on + strand, within CA265_RS06050 at 1486.288 kb on + strand, within CA265_RS06050 at 1486.305 kb on + strand, within CA265_RS06050 at 1486.376 kb on - strand, within CA265_RS06050 at 1486.376 kb on - strand, within CA265_RS06050 at 1486.376 kb on - strand, within CA265_RS06050 at 1486.402 kb on - strand, within CA265_RS06050 at 1486.414 kb on + strand, within CA265_RS06050 at 1486.449 kb on + strand, within CA265_RS06050 at 1486.450 kb on - strand, within CA265_RS06050 at 1486.484 kb on + strand, within CA265_RS06050 at 1486.521 kb on + strand, within CA265_RS06050 at 1486.522 kb on - strand, within CA265_RS06050 at 1486.530 kb on + strand, within CA265_RS06050 at 1486.534 kb on + strand, within CA265_RS06050 at 1486.535 kb on - strand, within CA265_RS06050 at 1486.535 kb on - strand, within CA265_RS06050 at 1486.536 kb on - strand, within CA265_RS06050 at 1486.544 kb on + strand, within CA265_RS06050 at 1486.568 kb on + strand, within CA265_RS06050 at 1486.579 kb on + strand, within CA265_RS06050 at 1486.661 kb on - strand, within CA265_RS06050 at 1486.675 kb on + strand, within CA265_RS06050 at 1486.676 kb on - strand, within CA265_RS06050 at 1486.676 kb on - strand, within CA265_RS06050 at 1486.676 kb on - strand, within CA265_RS06050 at 1486.683 kb on - strand, within CA265_RS06050 at 1486.687 kb on + strand, within CA265_RS06050 at 1486.704 kb on + strand, within CA265_RS06050 at 1486.774 kb on + strand, within CA265_RS06050 at 1486.829 kb on - strand, within CA265_RS06050 at 1486.974 kb on + strand, within CA265_RS06050 at 1486.975 kb on - strand, within CA265_RS06050 at 1486.981 kb on - strand, within CA265_RS06050 at 1486.985 kb on - strand, within CA265_RS06050 at 1487.008 kb on + strand, within CA265_RS06050 at 1487.132 kb on - strand, within CA265_RS06050 at 1487.132 kb on - strand, within CA265_RS06050 at 1487.135 kb on + strand, within CA265_RS06050 at 1487.170 kb on + strand, within CA265_RS06050 at 1487.191 kb on + strand, within CA265_RS06050 at 1487.191 kb on + strand, within CA265_RS06050 at 1487.224 kb on + strand, within CA265_RS06050 at 1487.231 kb on - strand, within CA265_RS06050 at 1487.324 kb on - strand, within CA265_RS06050 at 1487.324 kb on - strand, within CA265_RS06050 at 1487.329 kb on - strand, within CA265_RS06050 at 1487.329 kb on - strand at 1487.392 kb on - strand, within CA265_RS06050 at 1487.425 kb on + strand, within CA265_RS06050 at 1487.466 kb on + strand, within CA265_RS06050 at 1487.520 kb on + strand, within CA265_RS06050 at 1487.649 kb on - strand, within CA265_RS06050 at 1487.722 kb on + strand, within CA265_RS06050 at 1487.733 kb on + strand, within CA265_RS06050 at 1487.757 kb on + strand, within CA265_RS06050 at 1487.758 kb on - strand, within CA265_RS06050 at 1487.758 kb on - strand, within CA265_RS06050 at 1487.791 kb on + strand, within CA265_RS06050 at 1487.929 kb on - strand, within CA265_RS06050 at 1487.929 kb on - strand, within CA265_RS06050 at 1487.954 kb on - strand, within CA265_RS06050 at 1487.954 kb on - strand, within CA265_RS06050 at 1487.987 kb on + strand, within CA265_RS06050 at 1488.092 kb on - strand at 1488.180 kb on + strand at 1488.181 kb on - strand at 1488.200 kb on - strand at 1488.236 kb on - strand at 1488.248 kb on - strand at 1488.277 kb on - strand at 1488.283 kb on + strand at 1488.287 kb on - strand at 1488.371 kb on + strand at 1488.376 kb on + strand at 1488.379 kb on + strand at 1488.392 kb on - strand at 1488.512 kb on + strand at 1488.563 kb on + strand at 1488.564 kb on - strand at 1488.565 kb on + strand at 1488.577 kb on - strand at 1488.662 kb on + strand at 1488.725 kb on - strand, within CA265_RS06055 at 1488.725 kb on - strand, within CA265_RS06055 at 1488.725 kb on - strand, within CA265_RS06055 at 1488.788 kb on + strand, within CA265_RS06055 at 1488.789 kb on - strand, within CA265_RS06055 at 1488.838 kb on - strand, within CA265_RS06055 at 1488.843 kb on + strand, within CA265_RS06055 at 1488.844 kb on - strand, within CA265_RS06055 at 1488.849 kb on - strand, within CA265_RS06055 at 1488.889 kb on - strand, within CA265_RS06055 at 1488.985 kb on + strand, within CA265_RS06055 at 1489.106 kb on + strand, within CA265_RS06055 at 1489.148 kb on - strand, within CA265_RS06055 at 1489.163 kb on + strand, within CA265_RS06055 at 1489.217 kb on + strand, within CA265_RS06055 at 1489.217 kb on + strand, within CA265_RS06055 at 1489.236 kb on - strand, within CA265_RS06055 at 1489.236 kb on - strand, within CA265_RS06055 at 1489.245 kb on + strand, within CA265_RS06055 at 1489.281 kb on + strand, within CA265_RS06055
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 1,483,379 + CA265_RS06045 0.48 +0.3 1,483,390 - CA265_RS06045 0.49 +0.9 1,483,390 - CA265_RS06045 0.49 -0.7 1,483,477 + CA265_RS06045 0.54 -2.7 1,483,478 - CA265_RS06045 0.54 +0.6 1,483,498 - CA265_RS06045 0.55 +2.2 1,483,551 - CA265_RS06045 0.59 -3.0 1,483,555 - CA265_RS06045 0.59 +0.6 1,483,557 + CA265_RS06045 0.59 +0.7 1,483,641 + CA265_RS06045 0.64 -1.0 1,483,641 + CA265_RS06045 0.64 -0.5 1,483,654 - CA265_RS06045 0.65 +0.9 1,483,663 + CA265_RS06045 0.65 +1.2 1,483,664 - CA265_RS06045 0.65 -2.7 1,483,738 - CA265_RS06045 0.70 +0.3 1,483,740 + CA265_RS06045 0.70 -1.8 1,483,874 - CA265_RS06045 0.78 -0.1 1,483,925 + CA265_RS06045 0.81 -0.0 1,483,926 - CA265_RS06045 0.81 -1.1 1,483,992 + CA265_RS06045 0.85 +1.3 1,484,023 + CA265_RS06045 0.87 -1.0 1,484,023 + CA265_RS06045 0.87 +0.2 1,484,024 - CA265_RS06045 0.87 +0.2 1,484,024 - CA265_RS06045 0.87 +0.5 1,484,137 + +2.5 1,484,137 + -1.4 1,484,188 - +0.3 1,484,192 + +1.8 1,484,233 + +0.8 1,484,264 + +0.5 1,484,308 - +0.8 1,484,308 - -1.4 1,484,431 + -1.7 1,484,437 + +2.9 1,484,451 - -0.7 1,484,451 - -0.0 1,484,480 - +1.0 1,484,488 - -3.8 1,484,498 + -3.7 1,484,498 + +2.5 1,484,499 - +0.6 1,484,499 - +0.6 1,484,561 + +1.6 1,484,570 - -1.8 1,484,661 + +0.4 1,484,666 - -0.5 1,484,687 + +0.2 1,484,687 + -4.3 1,484,688 - -1.2 1,484,724 - -0.5 1,484,752 - -1.4 1,484,778 + CA265_RS06050 0.10 +0.7 1,484,778 + CA265_RS06050 0.10 +0.8 1,484,779 - CA265_RS06050 0.11 +0.8 1,484,802 + CA265_RS06050 0.11 -1.2 1,484,803 - CA265_RS06050 0.11 -0.1 1,484,902 - CA265_RS06050 0.14 +0.6 1,484,903 + CA265_RS06050 0.14 -1.0 1,484,956 + CA265_RS06050 0.15 -1.0 1,484,957 - CA265_RS06050 0.15 +0.2 1,484,957 - CA265_RS06050 0.15 +0.8 1,484,978 - CA265_RS06050 0.15 -0.6 1,485,022 + CA265_RS06050 0.17 +1.0 1,485,034 + CA265_RS06050 0.17 +0.8 1,485,035 - CA265_RS06050 0.17 -3.5 1,485,035 - -1.8 1,485,134 - CA265_RS06050 0.19 +0.5 1,485,134 - CA265_RS06050 0.19 -3.8 1,485,150 + CA265_RS06050 0.20 -5.6 1,485,203 + CA265_RS06050 0.21 +0.0 1,485,230 + CA265_RS06050 0.22 +0.2 1,485,340 + +2.2 1,485,409 + CA265_RS06050 0.26 +0.2 1,485,409 + CA265_RS06050 0.26 -2.5 1,485,660 - CA265_RS06050 0.32 +0.0 1,485,662 - CA265_RS06050 0.32 +0.5 1,485,668 + CA265_RS06050 0.32 -0.9 1,485,668 + CA265_RS06050 0.32 +0.8 1,485,670 + CA265_RS06050 0.33 -2.7 1,485,671 - CA265_RS06050 0.33 -1.2 1,485,673 + CA265_RS06050 0.33 -0.1 1,485,698 - CA265_RS06050 0.33 -1.0 1,485,816 + CA265_RS06050 0.36 -0.5 1,485,817 - CA265_RS06050 0.36 +0.3 1,485,913 + CA265_RS06050 0.39 +0.2 1,485,918 - CA265_RS06050 0.39 -0.9 1,485,973 - CA265_RS06050 0.40 +0.9 1,486,037 + CA265_RS06050 0.42 -0.4 1,486,037 + CA265_RS06050 0.42 -3.7 1,486,100 - CA265_RS06050 0.43 +3.9 1,486,104 + CA265_RS06050 0.43 -1.0 1,486,118 + CA265_RS06050 0.44 -0.4 1,486,118 + CA265_RS06050 0.44 +0.1 1,486,119 - CA265_RS06050 0.44 -0.3 1,486,145 - CA265_RS06050 0.44 -1.5 1,486,154 - CA265_RS06050 0.45 +1.4 1,486,174 + CA265_RS06050 0.45 +0.0 1,486,282 + CA265_RS06050 0.48 -0.5 1,486,288 + CA265_RS06050 0.48 +0.1 1,486,305 + CA265_RS06050 0.48 -0.1 1,486,376 - CA265_RS06050 0.50 +0.4 1,486,376 - CA265_RS06050 0.50 +0.2 1,486,376 - CA265_RS06050 0.50 -1.7 1,486,402 - CA265_RS06050 0.51 -0.7 1,486,414 + CA265_RS06050 0.51 +0.5 1,486,449 + CA265_RS06050 0.52 -0.2 1,486,450 - CA265_RS06050 0.52 -1.1 1,486,484 + CA265_RS06050 0.53 -0.4 1,486,521 + CA265_RS06050 0.54 +3.1 1,486,522 - CA265_RS06050 0.54 -5.4 1,486,530 + CA265_RS06050 0.54 +0.7 1,486,534 + CA265_RS06050 0.54 -2.1 1,486,535 - CA265_RS06050 0.54 -3.6 1,486,535 - CA265_RS06050 0.54 +0.3 1,486,536 - CA265_RS06050 0.54 -0.9 1,486,544 + CA265_RS06050 0.54 -3.7 1,486,568 + CA265_RS06050 0.55 -3.8 1,486,579 + CA265_RS06050 0.55 -0.0 1,486,661 - CA265_RS06050 0.57 -0.2 1,486,675 + CA265_RS06050 0.57 +2.1 1,486,676 - CA265_RS06050 0.57 -3.9 1,486,676 - CA265_RS06050 0.57 +2.0 1,486,676 - CA265_RS06050 0.57 -3.6 1,486,683 - CA265_RS06050 0.58 -0.8 1,486,687 + CA265_RS06050 0.58 -0.7 1,486,704 + CA265_RS06050 0.58 -1.3 1,486,774 + CA265_RS06050 0.60 -0.3 1,486,829 - CA265_RS06050 0.61 -0.9 1,486,974 + CA265_RS06050 0.65 +0.7 1,486,975 - CA265_RS06050 0.65 -0.6 1,486,981 - CA265_RS06050 0.65 -0.6 1,486,985 - CA265_RS06050 0.65 -0.2 1,487,008 + CA265_RS06050 0.66 -2.1 1,487,132 - CA265_RS06050 0.69 -3.3 1,487,132 - CA265_RS06050 0.69 -3.3 1,487,135 + CA265_RS06050 0.69 +1.5 1,487,170 + CA265_RS06050 0.70 +0.6 1,487,191 + CA265_RS06050 0.70 -2.5 1,487,191 + CA265_RS06050 0.70 +0.8 1,487,224 + CA265_RS06050 0.71 -0.2 1,487,231 - CA265_RS06050 0.71 -1.9 1,487,324 - CA265_RS06050 0.73 -0.0 1,487,324 - CA265_RS06050 0.73 -3.6 1,487,329 - CA265_RS06050 0.74 -0.4 1,487,329 - -1.4 1,487,392 - CA265_RS06050 0.75 -1.4 1,487,425 + CA265_RS06050 0.76 -3.0 1,487,466 + CA265_RS06050 0.77 -0.3 1,487,520 + CA265_RS06050 0.78 +1.4 1,487,649 - CA265_RS06050 0.81 -0.8 1,487,722 + CA265_RS06050 0.83 -5.1 1,487,733 + CA265_RS06050 0.84 +0.1 1,487,757 + CA265_RS06050 0.84 -3.7 1,487,758 - CA265_RS06050 0.84 +1.4 1,487,758 - CA265_RS06050 0.84 +0.8 1,487,791 + CA265_RS06050 0.85 +0.1 1,487,929 - CA265_RS06050 0.88 -0.0 1,487,929 - CA265_RS06050 0.88 -3.7 1,487,954 - CA265_RS06050 0.89 +2.0 1,487,954 - CA265_RS06050 0.89 -0.5 1,487,987 + CA265_RS06050 0.90 -2.1 1,488,092 - -0.8 1,488,180 + -0.3 1,488,181 - -3.5 1,488,200 - -1.4 1,488,236 - -0.1 1,488,248 - -0.2 1,488,277 - -0.5 1,488,283 + +1.6 1,488,287 - +0.4 1,488,371 + +0.5 1,488,376 + +1.0 1,488,379 + +1.0 1,488,392 - +0.6 1,488,512 + +0.3 1,488,563 + +0.9 1,488,564 - +0.5 1,488,565 + -0.1 1,488,577 - -1.0 1,488,662 + +2.1 1,488,725 - CA265_RS06055 0.14 -0.1 1,488,725 - CA265_RS06055 0.14 -0.7 1,488,725 - CA265_RS06055 0.14 +1.0 1,488,788 + CA265_RS06055 0.19 -3.1 1,488,789 - CA265_RS06055 0.19 +0.0 1,488,838 - CA265_RS06055 0.23 +1.5 1,488,843 + CA265_RS06055 0.23 +0.9 1,488,844 - CA265_RS06055 0.23 +0.2 1,488,849 - CA265_RS06055 0.23 -0.2 1,488,889 - CA265_RS06055 0.26 +1.9 1,488,985 + CA265_RS06055 0.34 +0.6 1,489,106 + CA265_RS06055 0.43 +1.0 1,489,148 - CA265_RS06055 0.46 +1.2 1,489,163 + CA265_RS06055 0.47 +1.1 1,489,217 + CA265_RS06055 0.51 -0.5 1,489,217 + CA265_RS06055 0.51 -0.3 1,489,236 - CA265_RS06055 0.53 +0.4 1,489,236 - CA265_RS06055 0.53 -0.5 1,489,245 + CA265_RS06055 0.53 +1.1 1,489,281 + CA265_RS06055 0.56 +2.7
Or see this region's nucleotide sequence