Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00925

Experiment: Lactulose 20mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS00920 and CA265_RS00925 are separated by 150 nucleotidesCA265_RS00925 and CA265_RS00930 are separated by 88 nucleotides CA265_RS00920: CA265_RS00920 - hypothetical protein, at 227,711 to 228,439 _RS00920 CA265_RS00925: CA265_RS00925 - hypothetical protein, at 228,590 to 229,051 _RS00925 CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504 _RS00930 Position (kb) 228 229 230Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 227.613 kb on + strandat 227.648 kb on + strandat 227.649 kb on - strandat 227.807 kb on - strand, within CA265_RS00920at 227.853 kb on + strand, within CA265_RS00920at 227.949 kb on + strand, within CA265_RS00920at 227.949 kb on + strand, within CA265_RS00920at 227.956 kb on + strand, within CA265_RS00920at 227.966 kb on - strand, within CA265_RS00920at 228.068 kb on + strand, within CA265_RS00920at 228.069 kb on - strand, within CA265_RS00920at 228.069 kb on - strand, within CA265_RS00920at 228.091 kb on - strand, within CA265_RS00920at 228.138 kb on - strand, within CA265_RS00920at 228.196 kb on + strand, within CA265_RS00920at 228.255 kb on + strand, within CA265_RS00920at 228.272 kb on - strand, within CA265_RS00920at 228.295 kb on + strand, within CA265_RS00920at 228.296 kb on - strand, within CA265_RS00920at 228.301 kb on - strand, within CA265_RS00920at 228.313 kb on - strand, within CA265_RS00920at 228.357 kb on - strand, within CA265_RS00920at 228.370 kb on + strandat 228.380 kb on - strandat 228.430 kb on - strandat 228.432 kb on - strandat 228.451 kb on + strandat 228.455 kb on + strandat 228.493 kb on + strandat 228.551 kb on + strandat 228.578 kb on - strandat 228.659 kb on + strand, within CA265_RS00925at 228.662 kb on - strand, within CA265_RS00925at 228.683 kb on - strand, within CA265_RS00925at 228.736 kb on + strand, within CA265_RS00925at 228.754 kb on + strand, within CA265_RS00925at 228.754 kb on + strand, within CA265_RS00925at 228.824 kb on + strand, within CA265_RS00925at 228.901 kb on + strand, within CA265_RS00925at 228.901 kb on + strand, within CA265_RS00925at 228.902 kb on - strand, within CA265_RS00925at 228.967 kb on - strand, within CA265_RS00925at 229.114 kb on - strandat 229.114 kb on - strandat 229.148 kb on + strandat 229.148 kb on + strandat 229.224 kb on + strandat 229.240 kb on + strandat 229.240 kb on + strandat 229.319 kb on + strandat 229.331 kb on - strandat 229.359 kb on - strandat 229.449 kb on + strandat 229.449 kb on + strandat 229.450 kb on - strandat 229.561 kb on - strandat 229.567 kb on - strandat 229.590 kb on + strand, within CA265_RS00930at 229.591 kb on - strand, within CA265_RS00930at 229.591 kb on - strand, within CA265_RS00930at 229.598 kb on + strand, within CA265_RS00930at 229.599 kb on - strand, within CA265_RS00930at 229.599 kb on - strand, within CA265_RS00930at 229.603 kb on - strand, within CA265_RS00930at 229.603 kb on - strand, within CA265_RS00930at 229.603 kb on - strand, within CA265_RS00930at 229.603 kb on - strand, within CA265_RS00930at 229.622 kb on + strand, within CA265_RS00930at 229.642 kb on + strand, within CA265_RS00930at 229.757 kb on + strand, within CA265_RS00930at 229.812 kb on + strand, within CA265_RS00930at 229.839 kb on + strand, within CA265_RS00930at 229.945 kb on + strand, within CA265_RS00930at 229.946 kb on - strand, within CA265_RS00930at 229.986 kb on - strand, within CA265_RS00930at 230.050 kb on + strand, within CA265_RS00930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose 20mM (C)
remove
227,613 + +0.6
227,648 + +0.3
227,649 - -2.2
227,807 - CA265_RS00920 0.13 -2.2
227,853 + CA265_RS00920 0.19 -0.5
227,949 + CA265_RS00920 0.33 +0.2
227,949 + CA265_RS00920 0.33 +2.1
227,956 + CA265_RS00920 0.34 -2.8
227,966 - CA265_RS00920 0.35 -0.4
228,068 + CA265_RS00920 0.49 +1.6
228,069 - CA265_RS00920 0.49 -3.7
228,069 - CA265_RS00920 0.49 -3.5
228,091 - CA265_RS00920 0.52 -2.0
228,138 - CA265_RS00920 0.59 +1.0
228,196 + CA265_RS00920 0.67 +0.9
228,255 + CA265_RS00920 0.75 +1.6
228,272 - CA265_RS00920 0.77 -0.8
228,295 + CA265_RS00920 0.80 -0.8
228,296 - CA265_RS00920 0.80 +1.1
228,301 - CA265_RS00920 0.81 -0.3
228,313 - CA265_RS00920 0.83 +1.2
228,357 - CA265_RS00920 0.89 +1.0
228,370 + -1.7
228,380 - -2.9
228,430 - +2.1
228,432 - -0.9
228,451 + +1.0
228,455 + +1.9
228,493 + -0.8
228,551 + -1.1
228,578 - +1.1
228,659 + CA265_RS00925 0.15 +2.3
228,662 - CA265_RS00925 0.16 -0.7
228,683 - CA265_RS00925 0.20 +0.3
228,736 + CA265_RS00925 0.32 +0.6
228,754 + CA265_RS00925 0.35 +2.0
228,754 + CA265_RS00925 0.35 +0.9
228,824 + CA265_RS00925 0.51 +0.4
228,901 + CA265_RS00925 0.67 +0.3
228,901 + CA265_RS00925 0.67 -0.2
228,902 - CA265_RS00925 0.68 -4.0
228,967 - CA265_RS00925 0.82 -1.0
229,114 - -0.0
229,114 - -0.0
229,148 + +0.8
229,148 + +4.5
229,224 + -2.3
229,240 + +0.7
229,240 + +0.8
229,319 + +1.8
229,331 - -3.2
229,359 - +1.1
229,449 + +2.0
229,449 + -4.0
229,450 - +0.1
229,561 - -0.1
229,567 - +1.0
229,590 + CA265_RS00930 0.10 +1.6
229,591 - CA265_RS00930 0.10 +2.5
229,591 - CA265_RS00930 0.10 +2.1
229,598 + CA265_RS00930 0.10 +0.3
229,599 - CA265_RS00930 0.11 -0.8
229,599 - CA265_RS00930 0.11 -3.7
229,603 - CA265_RS00930 0.11 -0.4
229,603 - CA265_RS00930 0.11 +1.1
229,603 - CA265_RS00930 0.11 +0.6
229,603 - CA265_RS00930 0.11 -4.5
229,622 + CA265_RS00930 0.11 -0.2
229,642 + CA265_RS00930 0.12 -2.1
229,757 + CA265_RS00930 0.14 -4.7
229,812 + CA265_RS00930 0.15 -2.9
229,839 + CA265_RS00930 0.16 +2.0
229,945 + CA265_RS00930 0.18 -0.2
229,946 - CA265_RS00930 0.18 -0.1
229,986 - CA265_RS00930 0.19 +1.2
230,050 + CA265_RS00930 0.21 -1.3

Or see this region's nucleotide sequence