Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00710 and CA265_RS00715 are separated by 270 nucleotides CA265_RS00715 and CA265_RS00720 are separated by 86 nucleotides
CA265_RS00710: CA265_RS00710 - hypothetical protein, at 161,248 to 165,369
_RS00710
CA265_RS00715: CA265_RS00715 - hypothetical protein, at 165,640 to 168,699
_RS00715
CA265_RS00720: CA265_RS00720 - hypothetical protein, at 168,786 to 170,468
_RS00720
Position (kb) 165
166
167
168
169 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 164.689 kb on + strand, within CA265_RS00710 at 164.703 kb on + strand, within CA265_RS00710 at 164.717 kb on - strand, within CA265_RS00710 at 164.726 kb on + strand, within CA265_RS00710 at 164.733 kb on + strand, within CA265_RS00710 at 164.737 kb on + strand, within CA265_RS00710 at 164.738 kb on - strand, within CA265_RS00710 at 164.743 kb on + strand, within CA265_RS00710 at 164.848 kb on + strand, within CA265_RS00710 at 164.917 kb on - strand, within CA265_RS00710 at 164.917 kb on - strand, within CA265_RS00710 at 164.920 kb on - strand, within CA265_RS00710 at 164.951 kb on + strand, within CA265_RS00710 at 164.964 kb on + strand at 164.985 kb on + strand at 164.986 kb on - strand at 165.039 kb on + strand at 165.039 kb on + strand at 165.065 kb on - strand at 165.079 kb on - strand at 165.092 kb on + strand at 165.095 kb on + strand at 165.095 kb on + strand at 165.154 kb on - strand at 165.178 kb on - strand at 165.178 kb on - strand at 165.250 kb on - strand at 165.356 kb on - strand at 165.360 kb on + strand at 165.407 kb on + strand at 165.421 kb on - strand at 165.553 kb on + strand at 165.573 kb on + strand at 165.637 kb on + strand at 165.638 kb on - strand at 165.639 kb on + strand at 165.640 kb on - strand at 165.666 kb on - strand at 165.686 kb on + strand at 165.686 kb on + strand at 165.687 kb on - strand at 165.689 kb on - strand at 165.696 kb on - strand at 165.721 kb on - strand at 165.721 kb on - strand at 165.726 kb on - strand at 165.743 kb on + strand at 165.743 kb on + strand at 165.805 kb on - strand at 165.813 kb on + strand at 165.889 kb on - strand at 165.893 kb on + strand at 165.894 kb on - strand at 165.894 kb on - strand at 165.903 kb on - strand at 165.937 kb on + strand at 165.972 kb on - strand, within CA265_RS00715 at 166.014 kb on + strand, within CA265_RS00715 at 166.015 kb on - strand, within CA265_RS00715 at 166.025 kb on + strand, within CA265_RS00715 at 166.025 kb on + strand, within CA265_RS00715 at 166.043 kb on + strand, within CA265_RS00715 at 166.092 kb on + strand, within CA265_RS00715 at 166.092 kb on + strand, within CA265_RS00715 at 166.116 kb on + strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.191 kb on + strand, within CA265_RS00715 at 166.195 kb on - strand, within CA265_RS00715 at 166.211 kb on + strand, within CA265_RS00715 at 166.212 kb on - strand, within CA265_RS00715 at 166.247 kb on - strand, within CA265_RS00715 at 166.272 kb on - strand, within CA265_RS00715 at 166.285 kb on - strand, within CA265_RS00715 at 166.290 kb on - strand, within CA265_RS00715 at 166.301 kb on + strand, within CA265_RS00715 at 166.301 kb on + strand, within CA265_RS00715 at 166.332 kb on + strand, within CA265_RS00715 at 166.410 kb on - strand, within CA265_RS00715 at 166.440 kb on - strand, within CA265_RS00715 at 166.458 kb on + strand, within CA265_RS00715 at 166.463 kb on + strand, within CA265_RS00715 at 166.463 kb on + strand, within CA265_RS00715 at 166.464 kb on - strand, within CA265_RS00715 at 166.465 kb on + strand, within CA265_RS00715 at 166.466 kb on - strand, within CA265_RS00715 at 166.566 kb on - strand, within CA265_RS00715 at 166.566 kb on - strand, within CA265_RS00715 at 166.586 kb on + strand, within CA265_RS00715 at 166.614 kb on + strand, within CA265_RS00715 at 166.669 kb on + strand, within CA265_RS00715 at 166.670 kb on - strand, within CA265_RS00715 at 166.687 kb on - strand, within CA265_RS00715 at 166.733 kb on - strand, within CA265_RS00715 at 166.770 kb on + strand, within CA265_RS00715 at 166.787 kb on + strand, within CA265_RS00715 at 166.852 kb on - strand, within CA265_RS00715 at 166.956 kb on + strand, within CA265_RS00715 at 166.957 kb on - strand, within CA265_RS00715 at 167.029 kb on + strand, within CA265_RS00715 at 167.038 kb on - strand, within CA265_RS00715 at 167.088 kb on - strand, within CA265_RS00715 at 167.099 kb on + strand, within CA265_RS00715 at 167.125 kb on - strand, within CA265_RS00715 at 167.201 kb on + strand, within CA265_RS00715 at 167.201 kb on + strand, within CA265_RS00715 at 167.202 kb on - strand, within CA265_RS00715 at 167.202 kb on - strand at 167.310 kb on + strand, within CA265_RS00715 at 167.322 kb on + strand, within CA265_RS00715 at 167.323 kb on - strand, within CA265_RS00715 at 167.339 kb on - strand, within CA265_RS00715 at 167.388 kb on + strand, within CA265_RS00715 at 167.389 kb on - strand, within CA265_RS00715 at 167.389 kb on - strand, within CA265_RS00715 at 167.411 kb on - strand, within CA265_RS00715 at 167.413 kb on - strand, within CA265_RS00715 at 167.471 kb on - strand, within CA265_RS00715 at 167.551 kb on - strand, within CA265_RS00715 at 167.587 kb on + strand, within CA265_RS00715 at 167.595 kb on + strand, within CA265_RS00715 at 167.595 kb on + strand, within CA265_RS00715 at 167.628 kb on + strand, within CA265_RS00715 at 167.628 kb on + strand, within CA265_RS00715 at 167.636 kb on - strand, within CA265_RS00715 at 167.638 kb on + strand, within CA265_RS00715 at 167.653 kb on - strand, within CA265_RS00715 at 167.656 kb on + strand, within CA265_RS00715 at 167.657 kb on - strand, within CA265_RS00715 at 167.703 kb on + strand, within CA265_RS00715 at 167.704 kb on - strand, within CA265_RS00715 at 167.713 kb on - strand, within CA265_RS00715 at 167.889 kb on - strand, within CA265_RS00715 at 167.889 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.941 kb on - strand, within CA265_RS00715 at 167.957 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 168.163 kb on + strand, within CA265_RS00715 at 168.164 kb on - strand, within CA265_RS00715 at 168.241 kb on + strand, within CA265_RS00715 at 168.248 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.265 kb on + strand, within CA265_RS00715 at 168.294 kb on - strand, within CA265_RS00715 at 168.313 kb on + strand, within CA265_RS00715 at 168.319 kb on + strand, within CA265_RS00715 at 168.320 kb on - strand, within CA265_RS00715 at 168.438 kb on + strand at 168.500 kb on + strand at 168.521 kb on + strand at 168.522 kb on - strand at 168.528 kb on + strand at 168.528 kb on + strand at 168.529 kb on - strand at 168.552 kb on + strand at 168.617 kb on - strand at 168.618 kb on + strand at 168.627 kb on - strand at 168.712 kb on - strand at 168.778 kb on - strand at 168.827 kb on + strand at 168.851 kb on + strand at 168.862 kb on + strand at 168.894 kb on - strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.898 kb on - strand at 168.898 kb on - strand at 168.929 kb on - strand at 168.958 kb on - strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.988 kb on - strand, within CA265_RS00720 at 169.004 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.094 kb on - strand, within CA265_RS00720 at 169.113 kb on - strand, within CA265_RS00720 at 169.142 kb on - strand, within CA265_RS00720 at 169.154 kb on + strand, within CA265_RS00720 at 169.220 kb on + strand, within CA265_RS00720 at 169.221 kb on - strand, within CA265_RS00720 at 169.302 kb on - strand, within CA265_RS00720 at 169.470 kb on + strand, within CA265_RS00720 at 169.471 kb on - strand, within CA265_RS00720 at 169.547 kb on - strand, within CA265_RS00720 at 169.583 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.683 kb on - strand, within CA265_RS00720 at 169.689 kb on - strand, within CA265_RS00720
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 164,689 + CA265_RS00710 0.83 +2.9 164,703 + CA265_RS00710 0.84 -0.1 164,717 - CA265_RS00710 0.84 -2.6 164,726 + CA265_RS00710 0.84 +0.6 164,733 + CA265_RS00710 0.85 -0.2 164,737 + CA265_RS00710 0.85 +0.4 164,738 - CA265_RS00710 0.85 -0.2 164,743 + CA265_RS00710 0.85 -0.6 164,848 + CA265_RS00710 0.87 +2.4 164,917 - CA265_RS00710 0.89 +0.4 164,917 - CA265_RS00710 0.89 -1.6 164,920 - CA265_RS00710 0.89 +0.6 164,951 + CA265_RS00710 0.90 +1.4 164,964 + -2.3 164,985 + -3.1 164,986 - +0.4 165,039 + +0.5 165,039 + +0.8 165,065 - -2.1 165,079 - +0.9 165,092 + -1.5 165,095 + -0.2 165,095 + +1.7 165,154 - +0.5 165,178 - +0.4 165,178 - +2.6 165,250 - +0.1 165,356 - -2.2 165,360 + +0.5 165,407 + +0.8 165,421 - +0.2 165,553 + +1.6 165,573 + +1.6 165,637 + -1.2 165,638 - +1.0 165,639 + +2.4 165,640 - -1.3 165,666 - +0.1 165,686 + -1.3 165,686 + +0.8 165,687 - +0.3 165,689 - +0.6 165,696 - -3.4 165,721 - -0.2 165,721 - -1.1 165,726 - +1.3 165,743 + -1.6 165,743 + -0.1 165,805 - -2.8 165,813 + +0.0 165,889 - +2.9 165,893 + -0.9 165,894 - +0.2 165,894 - -0.1 165,903 - +2.3 165,937 + +1.9 165,972 - CA265_RS00715 0.11 -0.2 166,014 + CA265_RS00715 0.12 +1.1 166,015 - CA265_RS00715 0.12 -1.5 166,025 + CA265_RS00715 0.13 +1.5 166,025 + CA265_RS00715 0.13 +0.2 166,043 + CA265_RS00715 0.13 -2.3 166,092 + CA265_RS00715 0.15 -1.9 166,092 + CA265_RS00715 0.15 -1.6 166,116 + CA265_RS00715 0.16 -4.0 166,155 - CA265_RS00715 0.17 -4.4 166,155 - CA265_RS00715 0.17 +0.6 166,155 - CA265_RS00715 0.17 -0.0 166,191 + CA265_RS00715 0.18 +0.8 166,195 - CA265_RS00715 0.18 -2.8 166,211 + CA265_RS00715 0.19 +1.4 166,212 - CA265_RS00715 0.19 +0.9 166,247 - CA265_RS00715 0.20 -0.6 166,272 - CA265_RS00715 0.21 +0.3 166,285 - CA265_RS00715 0.21 +0.5 166,290 - CA265_RS00715 0.21 -0.9 166,301 + CA265_RS00715 0.22 +2.0 166,301 + CA265_RS00715 0.22 +0.8 166,332 + CA265_RS00715 0.23 -0.7 166,410 - CA265_RS00715 0.25 -1.4 166,440 - CA265_RS00715 0.26 -0.9 166,458 + CA265_RS00715 0.27 -1.2 166,463 + CA265_RS00715 0.27 -0.5 166,463 + CA265_RS00715 0.27 +2.5 166,464 - CA265_RS00715 0.27 -1.2 166,465 + CA265_RS00715 0.27 +1.3 166,466 - CA265_RS00715 0.27 +1.1 166,566 - CA265_RS00715 0.30 -1.4 166,566 - CA265_RS00715 0.30 -0.8 166,586 + CA265_RS00715 0.31 +1.0 166,614 + CA265_RS00715 0.32 +0.4 166,669 + CA265_RS00715 0.34 +0.2 166,670 - CA265_RS00715 0.34 +1.5 166,687 - CA265_RS00715 0.34 +1.0 166,733 - CA265_RS00715 0.36 -2.3 166,770 + CA265_RS00715 0.37 -3.0 166,787 + CA265_RS00715 0.37 +0.6 166,852 - CA265_RS00715 0.40 -0.3 166,956 + CA265_RS00715 0.43 -1.3 166,957 - CA265_RS00715 0.43 +0.1 167,029 + CA265_RS00715 0.45 +1.6 167,038 - CA265_RS00715 0.46 +1.0 167,088 - CA265_RS00715 0.47 -1.5 167,099 + CA265_RS00715 0.48 -3.5 167,125 - CA265_RS00715 0.49 -0.7 167,201 + CA265_RS00715 0.51 -3.1 167,201 + CA265_RS00715 0.51 -0.9 167,202 - CA265_RS00715 0.51 -1.5 167,202 - -0.0 167,310 + CA265_RS00715 0.55 +0.0 167,322 + CA265_RS00715 0.55 +3.0 167,323 - CA265_RS00715 0.55 -1.8 167,339 - CA265_RS00715 0.56 -3.1 167,388 + CA265_RS00715 0.57 -0.1 167,389 - CA265_RS00715 0.57 -1.7 167,389 - CA265_RS00715 0.57 +1.3 167,411 - CA265_RS00715 0.58 -3.8 167,413 - CA265_RS00715 0.58 -0.2 167,471 - CA265_RS00715 0.60 -1.1 167,551 - CA265_RS00715 0.62 -4.3 167,587 + CA265_RS00715 0.64 +1.1 167,595 + CA265_RS00715 0.64 +0.3 167,595 + CA265_RS00715 0.64 -0.3 167,628 + CA265_RS00715 0.65 +1.6 167,628 + CA265_RS00715 0.65 +0.7 167,636 - CA265_RS00715 0.65 -1.5 167,638 + CA265_RS00715 0.65 +2.5 167,653 - CA265_RS00715 0.66 -0.4 167,656 + CA265_RS00715 0.66 +0.5 167,657 - CA265_RS00715 0.66 -1.1 167,703 + CA265_RS00715 0.67 +0.8 167,704 - CA265_RS00715 0.67 -0.2 167,713 - CA265_RS00715 0.68 +0.4 167,889 - CA265_RS00715 0.73 -0.4 167,889 - CA265_RS00715 0.73 -3.1 167,938 - CA265_RS00715 0.75 -1.4 167,938 - CA265_RS00715 0.75 +1.1 167,941 - CA265_RS00715 0.75 -3.5 167,957 - CA265_RS00715 0.76 -5.2 167,960 - CA265_RS00715 0.76 +0.4 167,960 - CA265_RS00715 0.76 -2.7 168,163 + CA265_RS00715 0.82 +1.0 168,164 - CA265_RS00715 0.82 +0.4 168,241 + CA265_RS00715 0.85 +0.9 168,248 + CA265_RS00715 0.85 -0.9 168,261 + CA265_RS00715 0.86 -0.3 168,261 + CA265_RS00715 0.86 -1.7 168,265 + CA265_RS00715 0.86 -2.0 168,294 - CA265_RS00715 0.87 +2.0 168,313 + CA265_RS00715 0.87 -3.5 168,319 + CA265_RS00715 0.88 -0.3 168,320 - CA265_RS00715 0.88 -2.6 168,438 + -0.8 168,500 + +0.2 168,521 + +0.6 168,522 - -0.5 168,528 + +0.1 168,528 + -3.5 168,529 - -0.5 168,552 + +0.0 168,617 - -3.5 168,618 + +0.9 168,627 - -3.1 168,712 - -0.1 168,778 - +0.5 168,827 + +0.5 168,851 + -0.8 168,862 + +2.0 168,894 - -0.5 168,897 + +1.1 168,897 + -0.1 168,897 + -2.5 168,898 - -0.9 168,898 - -3.6 168,929 - -0.7 168,958 - CA265_RS00720 0.10 -2.3 168,983 + CA265_RS00720 0.12 -2.4 168,983 + CA265_RS00720 0.12 -0.0 168,983 + CA265_RS00720 0.12 -3.2 168,983 + CA265_RS00720 0.12 -1.8 168,988 - CA265_RS00720 0.12 +1.0 169,004 - CA265_RS00720 0.13 +0.2 169,029 - CA265_RS00720 0.14 -0.6 169,029 - CA265_RS00720 0.14 -1.2 169,029 - CA265_RS00720 0.14 +0.4 169,094 - CA265_RS00720 0.18 -1.6 169,113 - CA265_RS00720 0.19 -0.0 169,142 - CA265_RS00720 0.21 +1.2 169,154 + CA265_RS00720 0.22 +0.5 169,220 + CA265_RS00720 0.26 -1.5 169,221 - CA265_RS00720 0.26 -0.2 169,302 - CA265_RS00720 0.31 -0.5 169,470 + CA265_RS00720 0.41 +1.5 169,471 - CA265_RS00720 0.41 -0.7 169,547 - CA265_RS00720 0.45 +1.9 169,583 + CA265_RS00720 0.47 +1.2 169,682 + CA265_RS00720 0.53 +0.1 169,682 + CA265_RS00720 0.53 +2.7 169,683 - CA265_RS00720 0.53 +0.9 169,689 - CA265_RS00720 0.54 -0.1
Or see this region's nucleotide sequence