Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24880

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24875 and AO356_24880 are separated by 2 nucleotidesAO356_24880 and AO356_24885 are separated by 36 nucleotides AO356_24875: AO356_24875 - ATP-NAD kinase, at 5,637,408 to 5,638,481 _24875 AO356_24880: AO356_24880 - ABC transporter substrate-binding protein, at 5,638,484 to 5,639,461 _24880 AO356_24885: AO356_24885 - pyruvate dehydrogenase, at 5,639,498 to 5,640,514 _24885 Position (kb) 5638 5639 5640Strain fitness (log2 ratio) -2 -1 0 1 2at 5637.888 kb on + strand, within AO356_24875at 5638.523 kb on + strandat 5638.611 kb on - strand, within AO356_24880at 5638.724 kb on + strand, within AO356_24880at 5638.725 kb on - strand, within AO356_24880at 5639.211 kb on - strand, within AO356_24880at 5639.240 kb on + strand, within AO356_24880at 5639.391 kb on - strandat 5639.444 kb on + strandat 5639.445 kb on - strandat 5639.485 kb on - strandat 5639.517 kb on - strandat 5639.640 kb on + strand, within AO356_24885at 5639.641 kb on - strand, within AO356_24885at 5639.834 kb on + strand, within AO356_24885at 5640.056 kb on + strand, within AO356_24885at 5640.056 kb on + strand, within AO356_24885at 5640.056 kb on + strand, within AO356_24885at 5640.089 kb on + strand, within AO356_24885at 5640.153 kb on - strand, within AO356_24885at 5640.449 kb on + strandat 5640.449 kb on + strandat 5640.449 kb on + strandat 5640.450 kb on - strandat 5640.450 kb on - strandat 5640.450 kb on - strandat 5640.450 kb on - strandat 5640.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,637,888 + AO356_24875 0.45 -0.5
5,638,523 + +0.9
5,638,611 - AO356_24880 0.13 +1.5
5,638,724 + AO356_24880 0.25 -0.9
5,638,725 - AO356_24880 0.25 +1.0
5,639,211 - AO356_24880 0.74 +1.2
5,639,240 + AO356_24880 0.77 +0.3
5,639,391 - +0.5
5,639,444 + +0.4
5,639,445 - -2.7
5,639,485 - -0.6
5,639,517 - +0.5
5,639,640 + AO356_24885 0.14 -0.4
5,639,641 - AO356_24885 0.14 +0.6
5,639,834 + AO356_24885 0.33 -0.9
5,640,056 + AO356_24885 0.55 -0.8
5,640,056 + AO356_24885 0.55 +1.2
5,640,056 + AO356_24885 0.55 -0.8
5,640,089 + AO356_24885 0.58 -0.6
5,640,153 - AO356_24885 0.64 -0.7
5,640,449 + -1.5
5,640,449 + +1.1
5,640,449 + +2.2
5,640,450 - +1.4
5,640,450 - -0.3
5,640,450 - -0.4
5,640,450 - -0.4
5,640,450 - -1.5

Or see this region's nucleotide sequence