Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24375

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24370 and AO356_24375 overlap by 4 nucleotidesAO356_24375 and AO356_24380 overlap by 4 nucleotides AO356_24370: AO356_24370 - type VI secretion system protein ImpL, at 5,499,677 to 5,503,501 _24370 AO356_24375: AO356_24375 - type VI secretion protein, at 5,503,498 to 5,504,574 _24375 AO356_24380: AO356_24380 - hydroxyacid dehydrogenase, at 5,504,571 to 5,505,524 _24380 Position (kb) 5503 5504 5505Strain fitness (log2 ratio) -1 0 1at 5502.671 kb on + strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.720 kb on - strand, within AO356_24370at 5502.732 kb on - strand, within AO356_24370at 5503.214 kb on + strandat 5503.286 kb on + strandat 5503.287 kb on - strandat 5503.287 kb on - strandat 5503.287 kb on - strandat 5503.918 kb on + strand, within AO356_24375at 5504.021 kb on + strand, within AO356_24375at 5504.021 kb on + strand, within AO356_24375at 5504.022 kb on - strand, within AO356_24375at 5504.022 kb on - strand, within AO356_24375at 5504.219 kb on - strand, within AO356_24375at 5504.262 kb on - strand, within AO356_24375at 5504.706 kb on + strand, within AO356_24380at 5504.984 kb on - strand, within AO356_24380at 5505.016 kb on + strand, within AO356_24380at 5505.481 kb on + strandat 5505.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,502,671 + AO356_24370 0.78 +0.2
5,502,720 - AO356_24370 0.80 +0.0
5,502,720 - AO356_24370 0.80 +0.8
5,502,720 - AO356_24370 0.80 +0.8
5,502,732 - AO356_24370 0.80 -0.6
5,503,214 + +0.1
5,503,286 + -0.2
5,503,287 - +0.8
5,503,287 - -0.0
5,503,287 - +1.7
5,503,918 + AO356_24375 0.39 -1.6
5,504,021 + AO356_24375 0.49 -0.4
5,504,021 + AO356_24375 0.49 +0.9
5,504,022 - AO356_24375 0.49 -0.4
5,504,022 - AO356_24375 0.49 +0.1
5,504,219 - AO356_24375 0.67 +0.3
5,504,262 - AO356_24375 0.71 -0.6
5,504,706 + AO356_24380 0.14 +0.6
5,504,984 - AO356_24380 0.43 +1.0
5,505,016 + AO356_24380 0.47 +0.3
5,505,481 + -1.0
5,505,482 - +0.2

Or see this region's nucleotide sequence