Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23985 and AO356_23990 are separated by 242 nucleotides AO356_23990 and AO356_23995 are separated by 55 nucleotides AO356_23995 and AO356_24000 overlap by 4 nucleotides
AO356_23985: AO356_23985 - LysR family transcriptional regulator, at 5,377,761 to 5,378,618
_23985
AO356_23990: AO356_23990 - amino acid ABC transporter, at 5,378,861 to 5,379,703
_23990
AO356_23995: AO356_23995 - amino acid ABC transporter, at 5,379,759 to 5,380,610
_23995
AO356_24000: AO356_24000 - hydroxyacid dehydrogenase, at 5,380,607 to 5,382,031
_24000
Position (kb) 5378
5379
5380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5377.923 kb on - strand, within AO356_23985 at 5377.990 kb on + strand, within AO356_23985 at 5377.991 kb on - strand, within AO356_23985 at 5378.047 kb on + strand, within AO356_23985 at 5378.047 kb on + strand, within AO356_23985 at 5378.105 kb on - strand, within AO356_23985 at 5378.884 kb on - strand at 5379.338 kb on + strand, within AO356_23990 at 5379.339 kb on - strand, within AO356_23990 at 5379.339 kb on - strand, within AO356_23990 at 5379.930 kb on - strand, within AO356_23995 at 5379.952 kb on - strand, within AO356_23995 at 5380.113 kb on + strand, within AO356_23995 at 5380.129 kb on - strand, within AO356_23995 at 5380.254 kb on + strand, within AO356_23995 at 5380.254 kb on + strand, within AO356_23995 at 5380.576 kb on - strand at 5380.576 kb on - strand at 5380.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 5,377,923 - AO356_23985 0.19 -0.2 5,377,990 + AO356_23985 0.27 -0.0 5,377,991 - AO356_23985 0.27 -0.3 5,378,047 + AO356_23985 0.33 -0.2 5,378,047 + AO356_23985 0.33 -0.6 5,378,105 - AO356_23985 0.40 +0.8 5,378,884 - -0.9 5,379,338 + AO356_23990 0.57 -2.8 5,379,339 - AO356_23990 0.57 -1.8 5,379,339 - AO356_23990 0.57 +0.2 5,379,930 - AO356_23995 0.20 +0.0 5,379,952 - AO356_23995 0.23 -0.2 5,380,113 + AO356_23995 0.42 -0.2 5,380,129 - AO356_23995 0.43 +1.2 5,380,254 + AO356_23995 0.58 +0.6 5,380,254 + AO356_23995 0.58 +0.0 5,380,576 - -0.9 5,380,576 - -0.8 5,380,576 - +1.1
Or see this region's nucleotide sequence