Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23360

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23350 and AO356_23355 are separated by 43 nucleotidesAO356_23355 and AO356_23360 are separated by 28 nucleotidesAO356_23360 and AO356_23365 are separated by 1 nucleotidesAO356_23365 and AO356_23370 are separated by 123 nucleotides AO356_23350: AO356_23350 - S-transferase, at 5,237,172 to 5,238,011 _23350 AO356_23355: AO356_23355 - ABC transporter substrate-binding protein, at 5,238,055 to 5,238,789 _23355 AO356_23360: AO356_23360 - diguanylate cyclase, at 5,238,818 to 5,240,161 _23360 AO356_23365: AO356_23365 - amino acid ABC transporter substrate-binding protein, at 5,240,163 to 5,240,921 _23365 AO356_23370: AO356_23370 - aldo/keto reductase, at 5,241,045 to 5,242,040 _23370 Position (kb) 5238 5239 5240 5241Strain fitness (log2 ratio) -1 0 1 2at 5237.869 kb on + strand, within AO356_23350at 5237.870 kb on - strand, within AO356_23350at 5237.995 kb on + strandat 5237.995 kb on + strandat 5237.995 kb on + strandat 5238.005 kb on + strandat 5238.005 kb on + strandat 5238.006 kb on - strandat 5238.006 kb on - strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.057 kb on - strandat 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.362 kb on + strand, within AO356_23355at 5238.401 kb on + strand, within AO356_23355at 5238.402 kb on - strand, within AO356_23355at 5238.481 kb on + strand, within AO356_23355at 5238.481 kb on + strand, within AO356_23355at 5238.482 kb on - strand, within AO356_23355at 5238.482 kb on - strand, within AO356_23355at 5238.572 kb on + strand, within AO356_23355at 5238.690 kb on - strand, within AO356_23355at 5238.690 kb on - strand, within AO356_23355at 5238.754 kb on + strandat 5238.754 kb on + strandat 5238.755 kb on - strandat 5238.789 kb on + strandat 5238.789 kb on + strandat 5238.789 kb on + strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.861 kb on - strandat 5238.861 kb on - strandat 5238.861 kb on - strandat 5239.042 kb on + strand, within AO356_23360at 5239.167 kb on + strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.179 kb on + strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.275 kb on + strand, within AO356_23360at 5239.537 kb on + strand, within AO356_23360at 5239.570 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.702 kb on + strand, within AO356_23360at 5239.944 kb on + strand, within AO356_23360at 5240.166 kb on + strandat 5240.167 kb on - strandat 5240.191 kb on + strandat 5240.192 kb on - strandat 5240.362 kb on + strand, within AO356_23365at 5240.362 kb on + strand, within AO356_23365at 5240.362 kb on + strand, within AO356_23365at 5240.363 kb on - strand, within AO356_23365at 5240.422 kb on + strand, within AO356_23365at 5240.422 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.489 kb on - strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.645 kb on + strand, within AO356_23365at 5240.659 kb on + strand, within AO356_23365at 5240.659 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.810 kb on - strand, within AO356_23365at 5240.969 kb on - strandat 5240.971 kb on + strandat 5240.971 kb on + strandat 5240.971 kb on + strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.977 kb on + strandat 5240.978 kb on - strandat 5240.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,237,869 + AO356_23350 0.83 -0.1
5,237,870 - AO356_23350 0.83 -0.7
5,237,995 + +0.3
5,237,995 + +0.5
5,237,995 + +0.8
5,238,005 + -1.4
5,238,005 + -1.1
5,238,006 - -0.2
5,238,006 - +0.2
5,238,019 + -0.5
5,238,019 + -0.7
5,238,019 + +0.2
5,238,019 + -0.6
5,238,019 + +1.2
5,238,019 + -0.2
5,238,019 + +0.9
5,238,020 - +0.6
5,238,020 - +1.4
5,238,020 - +0.4
5,238,020 - +1.4
5,238,057 - +0.9
5,238,197 + AO356_23355 0.19 -1.7
5,238,197 + AO356_23355 0.19 -0.2
5,238,197 + AO356_23355 0.19 -0.4
5,238,197 + AO356_23355 0.19 -1.5
5,238,198 - AO356_23355 0.19 -0.6
5,238,198 - AO356_23355 0.19 -0.4
5,238,198 - AO356_23355 0.19 -0.5
5,238,198 - AO356_23355 0.19 +0.4
5,238,198 - AO356_23355 0.19 +0.0
5,238,198 - AO356_23355 0.19 +0.1
5,238,362 + AO356_23355 0.42 -0.0
5,238,401 + AO356_23355 0.47 -0.0
5,238,402 - AO356_23355 0.47 -1.2
5,238,481 + AO356_23355 0.58 -0.4
5,238,481 + AO356_23355 0.58 -0.2
5,238,482 - AO356_23355 0.58 -0.1
5,238,482 - AO356_23355 0.58 +0.4
5,238,572 + AO356_23355 0.70 -0.1
5,238,690 - AO356_23355 0.86 +0.1
5,238,690 - AO356_23355 0.86 +0.5
5,238,754 + +0.4
5,238,754 + +1.1
5,238,755 - -0.2
5,238,789 + -0.7
5,238,789 + -0.2
5,238,789 + +0.3
5,238,790 - -1.0
5,238,790 - -0.7
5,238,790 - -0.6
5,238,790 - +1.6
5,238,861 - -1.4
5,238,861 - -1.7
5,238,861 - +0.8
5,239,042 + AO356_23360 0.17 -0.4
5,239,167 + AO356_23360 0.26 +0.2
5,239,168 - AO356_23360 0.26 -0.2
5,239,168 - AO356_23360 0.26 +0.3
5,239,168 - AO356_23360 0.26 -1.0
5,239,179 + AO356_23360 0.27 -0.0
5,239,180 - AO356_23360 0.27 +0.2
5,239,180 - AO356_23360 0.27 +0.1
5,239,180 - AO356_23360 0.27 +1.0
5,239,275 + AO356_23360 0.34 +0.4
5,239,537 + AO356_23360 0.53 +0.9
5,239,570 + AO356_23360 0.56 -1.1
5,239,699 + AO356_23360 0.66 -0.6
5,239,699 + AO356_23360 0.66 +0.2
5,239,700 - AO356_23360 0.66 +0.0
5,239,700 - AO356_23360 0.66 +0.1
5,239,702 + AO356_23360 0.66 -0.6
5,239,944 + AO356_23360 0.84 +1.1
5,240,166 + -0.2
5,240,167 - +0.7
5,240,191 + +0.5
5,240,192 - -0.2
5,240,362 + AO356_23365 0.26 +0.4
5,240,362 + AO356_23365 0.26 -0.7
5,240,362 + AO356_23365 0.26 -0.1
5,240,363 - AO356_23365 0.26 -0.4
5,240,422 + AO356_23365 0.34 -0.1
5,240,422 + AO356_23365 0.34 +0.8
5,240,434 + AO356_23365 0.36 +0.5
5,240,434 + AO356_23365 0.36 +0.0
5,240,434 + AO356_23365 0.36 +0.2
5,240,434 + AO356_23365 0.36 +0.6
5,240,435 - AO356_23365 0.36 -0.8
5,240,435 - AO356_23365 0.36 +1.0
5,240,435 - AO356_23365 0.36 +0.8
5,240,489 - AO356_23365 0.43 +0.5
5,240,581 + AO356_23365 0.55 +0.4
5,240,581 + AO356_23365 0.55 +0.4
5,240,581 + AO356_23365 0.55 +0.4
5,240,581 + AO356_23365 0.55 +0.9
5,240,582 - AO356_23365 0.55 +0.3
5,240,582 - AO356_23365 0.55 -0.2
5,240,582 - AO356_23365 0.55 +0.4
5,240,587 + AO356_23365 0.56 +0.4
5,240,587 + AO356_23365 0.56 +0.7
5,240,587 + AO356_23365 0.56 +0.2
5,240,587 + AO356_23365 0.56 -0.2
5,240,587 + AO356_23365 0.56 +2.3
5,240,587 + AO356_23365 0.56 -0.1
5,240,587 + AO356_23365 0.56 +0.5
5,240,588 - AO356_23365 0.56 -0.3
5,240,588 - AO356_23365 0.56 -1.7
5,240,588 - AO356_23365 0.56 +0.3
5,240,588 - AO356_23365 0.56 -0.7
5,240,645 + AO356_23365 0.64 +0.2
5,240,659 + AO356_23365 0.65 +0.5
5,240,659 + AO356_23365 0.65 -1.3
5,240,809 + AO356_23365 0.85 -0.0
5,240,809 + AO356_23365 0.85 +0.6
5,240,809 + AO356_23365 0.85 -0.2
5,240,809 + AO356_23365 0.85 +1.1
5,240,810 - AO356_23365 0.85 -0.2
5,240,969 - +0.3
5,240,971 + +0.8
5,240,971 + +0.2
5,240,971 + -0.2
5,240,972 - +0.4
5,240,972 - +0.7
5,240,972 - +1.0
5,240,972 - -0.1
5,240,977 + -0.9
5,240,978 - -0.6
5,240,978 - -0.6

Or see this region's nucleotide sequence