Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20060

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20050 and AO356_20055 are separated by 193 nucleotidesAO356_20055 and AO356_20060 are separated by 146 nucleotidesAO356_20060 and AO356_20065 are separated by 65 nucleotidesAO356_20065 and AO356_20070 overlap by 4 nucleotides AO356_20050: AO356_20050 - hypothetical protein, at 4,487,986 to 4,488,765 _20050 AO356_20055: AO356_20055 - ATP-binding protein, at 4,488,959 to 4,489,474 _20055 AO356_20060: AO356_20060 - competence protein ComEC, at 4,489,621 to 4,491,867 _20060 AO356_20065: AO356_20065 - biopolymer transporter ExbB, at 4,491,933 to 4,492,598 _20065 AO356_20070: AO356_20070 - biopolymer transporter ExbD, at 4,492,595 to 4,493,023 _20070 Position (kb) 4489 4490 4491 4492Strain fitness (log2 ratio) -2 -1 0 1 2at 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.715 kb on + strandat 4488.716 kb on - strandat 4488.716 kb on - strandat 4488.716 kb on - strandat 4489.015 kb on - strand, within AO356_20055at 4489.182 kb on + strand, within AO356_20055at 4489.183 kb on - strand, within AO356_20055at 4489.253 kb on - strand, within AO356_20055at 4489.253 kb on - strand, within AO356_20055at 4489.253 kb on - strand, within AO356_20055at 4489.253 kb on - strand, within AO356_20055at 4489.409 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.417 kb on + strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.418 kb on - strand, within AO356_20055at 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.449 kb on + strandat 4489.450 kb on - strandat 4489.450 kb on - strandat 4489.450 kb on - strandat 4489.460 kb on + strandat 4489.474 kb on + strandat 4489.474 kb on + strandat 4489.514 kb on + strandat 4489.514 kb on + strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.515 kb on - strandat 4489.527 kb on + strandat 4489.587 kb on + strandat 4489.588 kb on - strandat 4489.588 kb on - strandat 4489.588 kb on - strandat 4489.588 kb on - strandat 4489.609 kb on - strandat 4489.726 kb on - strandat 4489.726 kb on - strandat 4489.726 kb on - strandat 4490.059 kb on + strand, within AO356_20060at 4490.060 kb on - strand, within AO356_20060at 4490.285 kb on + strand, within AO356_20060at 4490.286 kb on - strand, within AO356_20060at 4490.332 kb on + strand, within AO356_20060at 4490.332 kb on + strand, within AO356_20060at 4490.332 kb on + strand, within AO356_20060at 4490.332 kb on + strand, within AO356_20060at 4490.332 kb on + strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.333 kb on - strand, within AO356_20060at 4490.930 kb on + strand, within AO356_20060at 4491.166 kb on + strand, within AO356_20060at 4491.166 kb on + strand, within AO356_20060at 4491.215 kb on + strand, within AO356_20060at 4491.216 kb on - strand, within AO356_20060at 4491.460 kb on - strand, within AO356_20060at 4491.742 kb on + strandat 4491.743 kb on - strandat 4491.743 kb on - strandat 4491.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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4,488,715 + +1.4
4,488,715 + -0.4
4,488,715 + -0.2
4,488,715 + +1.5
4,488,715 + +0.3
4,488,716 - +0.7
4,488,716 - +0.9
4,488,716 - -0.7
4,489,015 - AO356_20055 0.11 +0.5
4,489,182 + AO356_20055 0.43 -0.9
4,489,183 - AO356_20055 0.43 +0.0
4,489,253 - AO356_20055 0.57 +1.1
4,489,253 - AO356_20055 0.57 +0.7
4,489,253 - AO356_20055 0.57 -0.4
4,489,253 - AO356_20055 0.57 -0.8
4,489,409 + AO356_20055 0.87 +0.5
4,489,417 + AO356_20055 0.89 -0.0
4,489,417 + AO356_20055 0.89 +0.6
4,489,417 + AO356_20055 0.89 +0.7
4,489,417 + AO356_20055 0.89 -0.3
4,489,417 + AO356_20055 0.89 -0.2
4,489,417 + AO356_20055 0.89 +0.0
4,489,418 - AO356_20055 0.89 +0.2
4,489,418 - AO356_20055 0.89 +1.1
4,489,418 - AO356_20055 0.89 +0.5
4,489,418 - AO356_20055 0.89 +0.3
4,489,418 - AO356_20055 0.89 +0.6
4,489,418 - AO356_20055 0.89 +0.6
4,489,418 - AO356_20055 0.89 +0.1
4,489,418 - AO356_20055 0.89 +0.7
4,489,418 - AO356_20055 0.89 -0.0
4,489,449 + -0.3
4,489,449 + +0.3
4,489,449 + +0.4
4,489,449 + -1.7
4,489,449 + -0.5
4,489,449 + -0.6
4,489,449 + +0.7
4,489,449 + +0.8
4,489,449 + +0.7
4,489,450 - -0.3
4,489,450 - +0.1
4,489,450 - -0.8
4,489,460 + +0.7
4,489,474 + +0.2
4,489,474 + -0.1
4,489,514 + +0.8
4,489,514 + -0.9
4,489,515 - +0.1
4,489,515 - -1.2
4,489,515 - +0.9
4,489,515 - +0.7
4,489,515 - +0.7
4,489,515 - -0.2
4,489,515 - +0.6
4,489,527 + +0.9
4,489,587 + +0.2
4,489,588 - +0.9
4,489,588 - -1.8
4,489,588 - +1.1
4,489,588 - -0.4
4,489,609 - -0.7
4,489,726 - +0.8
4,489,726 - -0.1
4,489,726 - -0.3
4,490,059 + AO356_20060 0.19 -0.1
4,490,060 - AO356_20060 0.20 -0.2
4,490,285 + AO356_20060 0.30 +2.1
4,490,286 - AO356_20060 0.30 -0.5
4,490,332 + AO356_20060 0.32 -0.0
4,490,332 + AO356_20060 0.32 -0.9
4,490,332 + AO356_20060 0.32 -1.4
4,490,332 + AO356_20060 0.32 -0.2
4,490,332 + AO356_20060 0.32 -1.8
4,490,333 - AO356_20060 0.32 +0.1
4,490,333 - AO356_20060 0.32 -0.8
4,490,333 - AO356_20060 0.32 +0.8
4,490,333 - AO356_20060 0.32 +0.1
4,490,333 - AO356_20060 0.32 -0.6
4,490,333 - AO356_20060 0.32 -0.7
4,490,333 - AO356_20060 0.32 +1.5
4,490,930 + AO356_20060 0.58 +0.4
4,491,166 + AO356_20060 0.69 +0.9
4,491,166 + AO356_20060 0.69 -0.5
4,491,215 + AO356_20060 0.71 +0.5
4,491,216 - AO356_20060 0.71 -0.1
4,491,460 - AO356_20060 0.82 -0.2
4,491,742 + +0.5
4,491,743 - +0.7
4,491,743 - +0.7
4,491,743 - +0.0

Or see this region's nucleotide sequence