Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04565 and AO356_04570 are separated by 12 nucleotides AO356_04570 and AO356_04575 are separated by 31 nucleotides
AO356_04565: AO356_04565 - RNA polymerase subunit sigma, at 1,029,502 to 1,030,449
_04565
AO356_04570: AO356_04570 - RNA polymerase subunit sigma, at 1,030,462 to 1,031,049
_04570
AO356_04575: AO356_04575 - RNA polymerase subunit sigma, at 1,031,081 to 1,031,662
_04575
Position (kb)
1030
1031
1032 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1029.719 kb on + strand, within AO356_04565 at 1029.719 kb on + strand, within AO356_04565 at 1029.719 kb on + strand, within AO356_04565 at 1029.719 kb on + strand, within AO356_04565 at 1029.720 kb on - strand, within AO356_04565 at 1029.720 kb on - strand, within AO356_04565 at 1029.720 kb on - strand, within AO356_04565 at 1029.720 kb on - strand, within AO356_04565 at 1029.720 kb on - strand, within AO356_04565 at 1030.081 kb on + strand, within AO356_04565 at 1030.149 kb on + strand, within AO356_04565 at 1030.191 kb on + strand, within AO356_04565 at 1030.191 kb on + strand, within AO356_04565 at 1030.191 kb on + strand, within AO356_04565 at 1030.191 kb on + strand, within AO356_04565 at 1030.191 kb on + strand, within AO356_04565 at 1030.192 kb on - strand, within AO356_04565 at 1030.192 kb on - strand, within AO356_04565 at 1030.284 kb on + strand, within AO356_04565 at 1030.284 kb on + strand, within AO356_04565 at 1030.284 kb on + strand, within AO356_04565 at 1030.284 kb on + strand, within AO356_04565 at 1030.284 kb on + strand, within AO356_04565 at 1030.285 kb on - strand, within AO356_04565 at 1030.285 kb on - strand, within AO356_04565 at 1030.300 kb on - strand, within AO356_04565 at 1030.314 kb on - strand, within AO356_04565 at 1030.432 kb on + strand at 1030.432 kb on + strand at 1030.432 kb on + strand at 1030.433 kb on - strand at 1030.438 kb on + strand at 1030.438 kb on + strand at 1030.438 kb on + strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.439 kb on - strand at 1030.460 kb on + strand at 1030.460 kb on + strand at 1030.461 kb on - strand at 1030.461 kb on - strand at 1030.493 kb on + strand at 1030.493 kb on + strand at 1030.494 kb on - strand at 1030.494 kb on - strand at 1030.494 kb on - strand at 1030.550 kb on + strand, within AO356_04570 at 1030.550 kb on + strand, within AO356_04570 at 1030.550 kb on + strand, within AO356_04570 at 1030.550 kb on + strand, within AO356_04570 at 1030.551 kb on - strand, within AO356_04570 at 1030.551 kb on - strand, within AO356_04570 at 1030.551 kb on - strand, within AO356_04570 at 1030.736 kb on + strand, within AO356_04570 at 1030.737 kb on - strand, within AO356_04570 at 1030.737 kb on - strand, within AO356_04570 at 1030.801 kb on - strand, within AO356_04570 at 1030.801 kb on - strand, within AO356_04570 at 1031.083 kb on - strand at 1031.083 kb on - strand at 1031.083 kb on - strand at 1031.193 kb on + strand, within AO356_04575 at 1031.193 kb on + strand, within AO356_04575 at 1031.216 kb on + strand, within AO356_04575 at 1031.217 kb on - strand, within AO356_04575 at 1031.217 kb on - strand, within AO356_04575 at 1031.217 kb on - strand, within AO356_04575 at 1031.217 kb on - strand, within AO356_04575 at 1031.217 kb on - strand, within AO356_04575 at 1031.222 kb on + strand, within AO356_04575 at 1031.222 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.343 kb on + strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.344 kb on - strand, within AO356_04575 at 1031.366 kb on + strand, within AO356_04575 at 1031.366 kb on + strand, within AO356_04575 at 1031.366 kb on + strand, within AO356_04575 at 1031.366 kb on + strand, within AO356_04575 at 1031.367 kb on - strand, within AO356_04575 at 1031.367 kb on - strand, within AO356_04575 at 1031.367 kb on - strand, within AO356_04575 at 1031.367 kb on - strand, within AO356_04575 at 1031.406 kb on + strand, within AO356_04575 at 1031.446 kb on + strand, within AO356_04575 at 1031.447 kb on - strand, within AO356_04575 at 1031.448 kb on + strand, within AO356_04575 at 1031.448 kb on + strand, within AO356_04575 at 1031.449 kb on - strand, within AO356_04575 at 1031.473 kb on + strand, within AO356_04575 at 1031.577 kb on + strand, within AO356_04575 at 1031.577 kb on + strand, within AO356_04575 at 1031.577 kb on + strand, within AO356_04575 at 1031.577 kb on + strand, within AO356_04575 at 1031.577 kb on + strand, within AO356_04575 at 1031.578 kb on - strand, within AO356_04575 at 1031.578 kb on - strand, within AO356_04575 at 1031.657 kb on + strand at 1031.698 kb on + strand at 1031.698 kb on + strand at 1031.699 kb on - strand at 1031.701 kb on + strand at 1031.701 kb on + strand at 1031.701 kb on + strand at 1031.702 kb on - strand at 1031.702 kb on - strand at 1031.702 kb on - strand at 1031.702 kb on - strand at 1031.724 kb on - strand at 1031.831 kb on + strand at 1031.832 kb on - strand at 1031.832 kb on - strand at 1031.872 kb on + strand at 1031.872 kb on + strand at 1031.872 kb on + strand at 1031.872 kb on + strand at 1031.916 kb on - strand at 1031.916 kb on - strand at 1031.916 kb on - strand at 1031.925 kb on - strand at 1031.949 kb on - strand at 1031.952 kb on + strand at 1031.952 kb on + strand at 1031.952 kb on + strand at 1031.953 kb on - strand at 1031.953 kb on - strand at 1031.953 kb on - strand at 1031.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,029,719 + AO356_04565 0.23 +0.2 1,029,719 + AO356_04565 0.23 +0.8 1,029,719 + AO356_04565 0.23 +0.6 1,029,719 + AO356_04565 0.23 -1.5 1,029,720 - AO356_04565 0.23 +0.0 1,029,720 - AO356_04565 0.23 +0.9 1,029,720 - AO356_04565 0.23 +0.9 1,029,720 - AO356_04565 0.23 +0.9 1,029,720 - AO356_04565 0.23 +1.1 1,030,081 + AO356_04565 0.61 -0.0 1,030,149 + AO356_04565 0.68 -1.2 1,030,191 + AO356_04565 0.73 -0.6 1,030,191 + AO356_04565 0.73 +1.1 1,030,191 + AO356_04565 0.73 +0.3 1,030,191 + AO356_04565 0.73 -0.6 1,030,191 + AO356_04565 0.73 +0.8 1,030,192 - AO356_04565 0.73 +1.3 1,030,192 - AO356_04565 0.73 +0.4 1,030,284 + AO356_04565 0.82 -0.1 1,030,284 + AO356_04565 0.82 +0.9 1,030,284 + AO356_04565 0.82 +1.2 1,030,284 + AO356_04565 0.82 +0.1 1,030,284 + AO356_04565 0.82 +1.0 1,030,285 - AO356_04565 0.83 +0.4 1,030,285 - AO356_04565 0.83 +0.1 1,030,300 - AO356_04565 0.84 -0.6 1,030,314 - AO356_04565 0.86 -0.7 1,030,432 + +1.1 1,030,432 + +0.8 1,030,432 + +1.6 1,030,433 - +1.0 1,030,438 + +0.7 1,030,438 + +1.2 1,030,438 + +1.4 1,030,439 - -0.2 1,030,439 - +0.1 1,030,439 - +0.7 1,030,439 - -0.5 1,030,439 - +0.8 1,030,439 - +0.2 1,030,439 - +0.9 1,030,460 + -0.6 1,030,460 + +0.6 1,030,461 - +0.0 1,030,461 - -1.0 1,030,493 + +0.2 1,030,493 + +0.6 1,030,494 - -0.2 1,030,494 - +0.4 1,030,494 - +0.4 1,030,550 + AO356_04570 0.15 +0.9 1,030,550 + AO356_04570 0.15 +0.3 1,030,550 + AO356_04570 0.15 +0.3 1,030,550 + AO356_04570 0.15 -0.4 1,030,551 - AO356_04570 0.15 -0.2 1,030,551 - AO356_04570 0.15 +0.4 1,030,551 - AO356_04570 0.15 +0.4 1,030,736 + AO356_04570 0.47 +0.3 1,030,737 - AO356_04570 0.47 +0.1 1,030,737 - AO356_04570 0.47 -0.4 1,030,801 - AO356_04570 0.58 +0.0 1,030,801 - AO356_04570 0.58 +0.0 1,031,083 - -2.0 1,031,083 - +0.0 1,031,083 - -3.0 1,031,193 + AO356_04575 0.19 -0.6 1,031,193 + AO356_04575 0.19 -1.8 1,031,216 + AO356_04575 0.23 -1.3 1,031,217 - AO356_04575 0.23 -3.2 1,031,217 - AO356_04575 0.23 -2.9 1,031,217 - AO356_04575 0.23 -2.7 1,031,217 - AO356_04575 0.23 -3.1 1,031,217 - AO356_04575 0.23 -1.8 1,031,222 + AO356_04575 0.24 -3.7 1,031,222 + AO356_04575 0.24 -3.1 1,031,343 + AO356_04575 0.45 -1.0 1,031,343 + AO356_04575 0.45 -3.3 1,031,343 + AO356_04575 0.45 -3.0 1,031,343 + AO356_04575 0.45 -3.4 1,031,343 + AO356_04575 0.45 -0.1 1,031,343 + AO356_04575 0.45 -3.2 1,031,343 + AO356_04575 0.45 +0.8 1,031,343 + AO356_04575 0.45 -3.3 1,031,343 + AO356_04575 0.45 -1.7 1,031,344 - AO356_04575 0.45 -2.9 1,031,344 - AO356_04575 0.45 -2.8 1,031,344 - AO356_04575 0.45 -1.8 1,031,344 - AO356_04575 0.45 -4.4 1,031,344 - AO356_04575 0.45 -2.7 1,031,344 - AO356_04575 0.45 -1.7 1,031,366 + AO356_04575 0.49 -2.0 1,031,366 + AO356_04575 0.49 -1.4 1,031,366 + AO356_04575 0.49 -0.9 1,031,366 + AO356_04575 0.49 -3.2 1,031,367 - AO356_04575 0.49 -1.0 1,031,367 - AO356_04575 0.49 -2.3 1,031,367 - AO356_04575 0.49 -3.0 1,031,367 - AO356_04575 0.49 -3.5 1,031,406 + AO356_04575 0.56 -2.0 1,031,446 + AO356_04575 0.63 -2.5 1,031,447 - AO356_04575 0.63 -3.5 1,031,448 + AO356_04575 0.63 -0.9 1,031,448 + AO356_04575 0.63 -2.9 1,031,449 - AO356_04575 0.63 -3.3 1,031,473 + AO356_04575 0.67 -3.3 1,031,577 + AO356_04575 0.85 -2.3 1,031,577 + AO356_04575 0.85 -3.0 1,031,577 + AO356_04575 0.85 -2.7 1,031,577 + AO356_04575 0.85 -3.6 1,031,577 + AO356_04575 0.85 -2.7 1,031,578 - AO356_04575 0.85 -1.6 1,031,578 - AO356_04575 0.85 -3.0 1,031,657 + -2.6 1,031,698 + -2.7 1,031,698 + -0.4 1,031,699 - -1.1 1,031,701 + -1.2 1,031,701 + -3.5 1,031,701 + -3.2 1,031,702 - -2.9 1,031,702 - -1.3 1,031,702 - -2.8 1,031,702 - -3.5 1,031,724 - -2.8 1,031,831 + -2.7 1,031,832 - +0.3 1,031,832 - +0.3 1,031,872 + -2.3 1,031,872 + -2.1 1,031,872 + -3.5 1,031,872 + -0.7 1,031,916 - -0.3 1,031,916 - +0.3 1,031,916 - -0.2 1,031,925 - +1.2 1,031,949 - +1.0 1,031,952 + -1.8 1,031,952 + -1.6 1,031,952 + -3.0 1,031,953 - +0.5 1,031,953 - +0.3 1,031,953 - +1.1 1,031,953 - -0.0
Or see this region's nucleotide sequence